View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7393_low_8 (Length: 229)

Name: NF7393_low_8
Description: NF7393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7393_low_8
NF7393_low_8
[»] chr1 (4 HSPs)
chr1 (1-229)||(13867879-13868107)
chr1 (135-229)||(33150843-33150937)
chr1 (1-226)||(26510421-26510646)
chr1 (1-34)||(45795267-45795300)
[»] chr7 (2 HSPs)
chr7 (1-229)||(35213481-35213709)
chr7 (1-227)||(26855563-26855789)
[»] chr4 (3 HSPs)
chr4 (1-229)||(43516794-43517022)
chr4 (1-229)||(20543933-20544161)
chr4 (4-40)||(38295784-38295820)
[»] chr3 (2 HSPs)
chr3 (1-229)||(40513770-40513998)
chr3 (6-229)||(34829267-34829490)
[»] chr2 (3 HSPs)
chr2 (1-229)||(11196199-11196427)
chr2 (1-214)||(32624217-32624430)
chr2 (159-214)||(144246-144301)
[»] chr6 (2 HSPs)
chr6 (1-214)||(14687072-14687285)
chr6 (6-57)||(26513744-26513795)
[»] chr5 (1 HSPs)
chr5 (1-229)||(21367982-21368210)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 13867879 - 13868107
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||    
13867879 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggtatcattgttggcgaggcagcatt 13867978  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
13867979 gtgtgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttggattgga 13868078  T
201 atgtcaggtgctgatccccttaatattga 229  Q
    |||||||||||||||||||||||||||||    
13868079 atgtcaggtgctgatccccttaatattga 13868107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 229
Target Start/End: Complemental strand, 33150937 - 33150843
Alignment:
135 tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattga 229  Q
    |||||||||||||| || || || ||||||||  | ||||||||| || |||||| |||||| |||||||||||||| || ||||||||||||||    
33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattga 33150843  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 26510421 - 26510646
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    |||| ||||| ||||| ||||||||  | ||||| ||||| |||||||||||||||||| | ||| |  | |||||  | |||| |  ||| ||||   |    
26510421 cgctgaaggtctccatctttgcttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaataccgaagcagttat 26510520  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    ||||||||| || || |||| ||  |||||||   |||| || ||||| |||||||| | ||| ||||| |||||||||  | |||||| |||||| |||    
26510521 gtgtgttacaggatgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcgga 26510620  T
201 atgtcaggtgctgatccccttaatat 226  Q
    |||||||||| ||| ||| |||||||    
26510621 atgtcaggtgttgacccctttaatat 26510646  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45795300 - 45795267
Alignment:
1 cgcttaaggtttccatttttgcttggagattgtt 34  Q
    |||||||||||||||||||||||||| |||||||    
45795300 cgcttaaggtttccatttttgcttggggattgtt 45795267  T

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Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 35213709 - 35213481
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||    
35213709 cgcttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggcatcattgttggcgaggcagcatt 35213610  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
35213609 gtgtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggcattttgtcaggtgttggattgga 35213510  T
201 atgtcaggtgctgatccccttaatattga 229  Q
    |||||||||| ||||||||||||||||||    
35213509 atgtcaggtgttgatccccttaatattga 35213481  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 26855789 - 26855563
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    |||| ||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| |  |||||||||| ||||   |||||||     |    
26855789 cgctcaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagcgaggcttgtat 26855690  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    |||||| || ||||| || ||||  ||| ||   |||||| | ||||| |||||  | ||||||||| ||||||||||| || |||||| || ||| |||    
26855689 gtgtgtcacagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtctttgatcgga 26855590  T
201 atgtcaggtgctgatccccttaatatt 227  Q
    |||||||||||||| ||  ||||||||    
26855589 atgtcaggtgctgacccttttaatatt 26855563  T

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Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 43516794 - 43517022
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||    
43516794 cgcttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaatcatctcctccggcgtggcatcatcgttggcgaggtagcatt 43516893  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    ||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
43516894 gtgtgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttggattgga 43516993  T
201 atgtcaggtgctgatccccttaatattga 229  Q
    |||||||||||||||||||||||||||||    
43516994 atgtcaggtgctgatccccttaatattga 43517022  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20544161 - 20543933
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    |||| ||||||||||||||| ||||| |||| || || |||||||||||||||||||| || |||||  |||||||||| ||||  |||||| ||    |    
20544161 cgctgaaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagacaagtat 20544062  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    |||||| || ||||| || ||||  ||| ||   |||||||||||||| || || || ||||||||| | ||||||||| || |||||| |||||| |||    
20544061 gtgtgtcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcgga 20543962  T
201 atgtcaggtgctgatccccttaatattga 229  Q
    |||||||||||||| ||| ||||||||||    
20543961 atgtcaggtgctgacccctttaatattga 20543933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 38295820 - 38295784
Alignment:
4 ttaaggtttccatttttgcttggagattgttacggga 40  Q
    |||| |||||||||||||||||||| |||||||||||    
38295820 ttaaagtttccatttttgcttggaggttgttacggga 38295784  T

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Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 40513770 - 40513998
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | || |||||||||||    
40513770 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttcttcggcgtggtatcatcgtcggtgaggcagcatt 40513869  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    ||||||| | |||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||    
40513870 gtgtgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcctacttttggtactttatggcattttgtcaggtgttggattgga 40513969  T
201 atgtcaggtgctgatccccttaatattga 229  Q
    |||||| ||||||||||||||||||||||    
40513970 atgtcatgtgctgatccccttaatattga 40513998  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 34829490 - 34829267
Alignment:
6 aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtg 105  Q
    ||||| ||||| ||||||||| | ||||| ||||| |||||| ||| ||||||| | |||||  | |||||  | |||| || ||| | ||   ||||||    
34829490 aaggtctccatctttgcttggcggttgttgcgggacaggttgtcgattaagaataatcttctaagacgtggagtaatcaatgccgaagtagttatgtgtg 34829391  T
106 ttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtc 205  Q
    |||| ||||| |||| ||  |||||||   |||| || ||||| |||||||| |||||  |||| |||||||||  | |||||| |||||| ||||||||    
34829390 ttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcggaatgtc 34829291  T
206 aggtgctgatccccttaatattga 229  Q
    ||||| | | ||| ||||||||||    
34829290 aggtgttaacccctttaatattga 34829267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11196427 - 11196199
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    |||| ||||||||||||||| ||||| ||||||| || |||||||||||||||||||| || |||||  |||||||||| |||| |||||||||||   |    
11196427 cgctgaaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcagttat 11196328  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    ||||||||| ||||| || ||||| |||  ||  |||||||||||||| || || || ||||||||| | ||||||||| || |||||| ||||||  ||    
11196327 gtgtgttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcaga 11196228  T
201 atgtcaggtgctgatccccttaatattga 229  Q
    ||||||||||  || | ||||||||||||    
11196227 atgtcaggtgtcgacctccttaatattga 11196199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 32624430 - 32624217
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    |||| |||||||||||||||| |||| |||| ||  | |||||||||||||||||||| || |||||  |||||||||| ||||  |||||||||    |    
32624430 cgctgaaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgaggcatgtat 32624331  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    |||||| || || || || ||||  ||| ||   |||||||||||||| ||||| || ||||||||| | ||||||||| || |||||| ||||||||||    
32624330 gtgtgtcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattgga 32624231  T
201 atgtcaggtgctga 214  Q
    ||||||||||||||    
32624230 atgtcaggtgctga 32624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 144246 - 144301
Alignment:
159 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 214  Q
    ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||    
144246 acttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga 144301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 14687072 - 14687285
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcatt 100  Q
    |||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| |  |||||||||| ||||   | ||||      |    
14687072 cgcttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagtgaggtttgtat 14687171  T
101 gtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgga 200  Q
    |||||| || ||||| ||  |||  ||| ||   |||||| | ||||| |||||  | ||||||||| ||||||||||| || |||||| |||||| |||    
14687172 gtgtgtcacagggtgcggtgtggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcgga 14687271  T
201 atgtcaggtgctga 214  Q
    ||||||||||||||    
14687272 atgtcaggtgctga 14687285  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 26513795 - 26513744
Alignment:
6 aaggtttccatttttgcttggagattgttacgggataggttgccgactaaga 57  Q
    |||||||||||||||||||||   ||||| ||||||||||||||||| ||||    
26513795 aaggtttccatttttgcttggcagttgttgcgggataggttgccgaccaaga 26513744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 21367982 - 21368210
Alignment:
1 cgcttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggca-gcat 99  Q
    |||| ||||||||||||||| ||||| |||| ||  | |||||||||||||||||||| || || ||  |||||||||| ||||  ||||||||| | |     
21367982 cgctgaaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggcataatcaacggcgaggcatgtaa 21368081  T
100 tgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgg 199  Q
    | ||||| || ||||| || ||||  ||| ||   ||| || | ||||| ||||| || ||||||||| | ||||||||| || |||||| |||||| ||    
21368082 t-tgtgtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcgg 21368180  T
200 aatgtcaggtgctgatccccttaatattga 229  Q
    ||||||||||||||| || |||||||||||    
21368181 aatgtcaggtgctgaccctcttaatattga 21368210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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