View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7393_low_9 (Length: 214)

Name: NF7393_low_9
Description: NF7393
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7393_low_9
NF7393_low_9
[»] chr1 (5 HSPs)
chr1 (16-214)||(45795444-45795642)
chr1 (16-214)||(13867537-13867735)
chr1 (21-123)||(34352752-34352854)
chr1 (145-214)||(34352643-34352712)
chr1 (21-60)||(5808973-5809012)
[»] chr4 (3 HSPs)
chr4 (16-214)||(43516452-43516650)
chr4 (156-213)||(20544305-20544362)
chr4 (151-189)||(54483016-54483054)
[»] chr3 (3 HSPs)
chr3 (16-214)||(40513428-40513626)
chr3 (140-189)||(18368801-18368850)
chr3 (21-97)||(34829774-34829850)
[»] chr2 (4 HSPs)
chr2 (119-214)||(11196571-11196666)
chr2 (28-123)||(11196680-11196775)
chr2 (140-189)||(35488082-35488131)
chr2 (140-189)||(8066072-8066121)
[»] chr6 (3 HSPs)
chr6 (16-124)||(14686712-14686820)
chr6 (140-191)||(23065893-23065944)
chr6 (140-191)||(9565610-9565661)
[»] chr7 (1 HSPs)
chr7 (156-214)||(26855933-26855991)
[»] scaffold0043 (1 HSPs)
scaffold0043 (157-214)||(34472-34529)
[»] chr5 (1 HSPs)
chr5 (157-214)||(476433-476490)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 45795642 - 45795444
Alignment:
Q  16 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 115  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45795642 cttacttttggtatgacaggtggctaggtgatgttcctttttgtatcagtttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 45795543  T
Q  116 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  45795542 tatggttgatggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgtttt 45795444  T

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Target: chr1; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 13867537 - 13867735
Alignment:
Q  16 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 115  Q
    |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13867537 cttacttttggtatgacaggtggcttggtgatgttcctttttgtatcaggttccgtcgtctttttaatttagtgtctaataagttgagcacggtagctga 13867636  T
Q  116 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  13867637 tatggttgttggagaggcgtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggcttttaattaatggtgtcgtttt 13867735  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 34352854 - 34352752
Alignment:
Q  21 ttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatgg 120  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||||| ||||| |||||| | |||| |||||||||| ||||||| |||||| ||||||    
T  34352854 ttttgatatgacaggtggcttggtgatgttcctttttgtatcaggttgcgtcgcctatttgacttagcgtctaataagctgagcacagtagctaatatgg 34352755  T
Q  121 ttg 123  Q
    |||    
T  34352754 ttg 34352752  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 34352712 - 34352643
Alignment:
Q  145 ggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||||||||| |||||||||||||||||  ||||||||||||||| ||  |||| |||||||||||||||    
T  34352712 ggcgtaggttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaactaatggtgtcgtttt 34352643  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 5809012 - 5808973
Alignment:
Q  21 ttttggtatgacaggtggctgagtgatgttcctttttgta 60  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  5809012 ttttggtatgacaggtggcttggtgatgttcctttttgta 5808973  T

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Target: chr4 (Bit Score: 159; Significance: 8e-85; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 43516452 - 43516650
Alignment:
Q  16 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 115  Q
    |||| ||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43516452 cttacttttggtatgacaagtggcttggtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 43516551  T
Q  116 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  43516552 tatggttgatggagaggcgtggagttggcggcgtaggttgagggtgtgggaggaggatatgctagaggagtgtaggcatttaattaatggtgtcgtttt 43516650  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 20544362 - 20544305
Alignment:
Q  156 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgttt 213  Q
    |||| ||||||||||||  || |||||||||||| | |||||||||||||||||||||    
T  20544362 agggcgtgggaggaggagatgttagaggagtgtaggtttttaattaatggtgtcgttt 20544305  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 54483016 - 54483054
Alignment:
Q  151 ggttaagggtgtgggaggaggatttgctagaggagtgta 189  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  54483016 ggttatgggtgtgggaggaggatttggtagaggagtgta 54483054  T

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Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 40513428 - 40513626
Alignment:
Q  16 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 115  Q
    |||| |||||||||||||| |||||| ||||||||||||| ||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||||    
T  40513428 cttacttttggtatgacagatggctgggtgatgttcctttctgtatcaggttccgtcgactttttaatttagtgtctgataagttgagcacgatagctga 40513527  T
Q  116 tatggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||    
T  40513528 tatggttgctggagaggggtggaattggcggcgtaggttaagggtgtgggaggaggatatgctagaggagtgtaggctgttaattaatggtgtcgtttt 40513626  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 18368801 - 18368850
Alignment:
Q  140 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 189  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||||    
T  18368801 ttggcggcgtaggttgtgggtgtgggaggaggctttgctagaggagtgta 18368850  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 34829850 - 34829774
Alignment:
Q  21 ttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataa 97  Q
    ||||||||||||||||||||  ||||||| ||||||||||  ||||| |||||  ||||| || |||||||||||||    
T  34829850 ttttggtatgacaggtggcttggtgatgtccctttttgtactaggtttcgtcggttatttgatctagtgtctaataa 34829774  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 11196666 - 11196571
Alignment:
Q  119 ggttgatggagaggcgtcgaattggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||||| |||||||||| |  |||| |||| | ||| |||||||||||||||||  ||||||||||||||| ||  ||||||||||||||||||||    
T  11196666 ggttgacggagaggcgtggggttggaggcgaatgttgagggtgtgggaggaggagatgctagaggagtgtaggcaattaattaatggtgtcgtttt 11196571  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 11196775 - 11196680
Alignment:
Q  28 atgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctgatatggttg 123  Q
    |||| ||||||||  |||||  ||||||||||| |||||||||| || ||||| | |||| |||||||||  |||| ||||| |||||||||||||    
T  11196775 atgataggtggcttggtgatactcctttttgtaccaggttccgttgtttatttgacttagcgtctaataaactgagtacggtggctgatatggttg 11196680  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 35488131 - 35488082
Alignment:
Q  140 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 189  Q
    |||||||||||||||  ||| ||||||||||| |||||||||||||||||    
T  35488131 ttggcggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgta 35488082  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 8066072 - 8066121
Alignment:
Q  140 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgta 189  Q
    |||||||||||||||  ||| ||||||||||| | |||||||||||||||    
T  8066072 ttggcggcgtaggttgtgggcgtgggaggaggctatgctagaggagtgta 8066121  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 14686712 - 14686820
Alignment:
Q  16 cttagttttggtatgacaggtggctgagtgatgttcctttttgtatcaggttccgtcgtctatttaatttagtgtctaataagttgagcacggtagctga 115  Q
    |||| ||||||||||||||||||||  |||||   ||||||||||  || ||||||||| | ||| ||||||  |||||||| |||||||| || |||||    
T  14686712 cttacttttggtatgacaggtggcttggtgatacacctttttgtactagattccgtcgtttgtttgatttagcatctaataaattgagcactgtggctga 14686811  T
Q  116 tatggttga 124  Q
    |||||||||    
T  14686812 tatggttga 14686820  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 23065893 - 23065944
Alignment:
Q  140 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag 191  Q
    |||||||||| ||||  ||| |||||||||||||||||||||||||||||||    
T  23065893 ttggcggcgtcggttgtgggcgtgggaggaggatttgctagaggagtgtaag 23065944  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 9565661 - 9565610
Alignment:
Q  140 ttggcggcgtaggttaagggtgtgggaggaggatttgctagaggagtgtaag 191  Q
    |||| ||||||||||  ||| ||||||||||| |||||||||||||||||||    
T  9565661 ttggaggcgtaggttgtgggcgtgggaggaggctttgctagaggagtgtaag 9565610  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 26855991 - 26855933
Alignment:
Q  156 agggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||| ||||||||||||  || |||||||||||| ||||||||||||||||||| ||||    
T  26855991 agggcgtgggaggaggagctgttagaggagtgtaggcttttaattaatggtgtcatttt 26855933  T

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Target: scaffold0043 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 214
Target Start/End: Original strand, 34472 - 34529
Alignment:
Q  157 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||||||| |||||    
T  34472 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgtttt 34529  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 476490 - 476433
Alignment:
Q  157 gggtgtgggaggaggatttgctagaggagtgtaagcttttaattaatggtgtcgtttt 214  Q
    |||||||||||||||| ||| |||||||||||| ||  ||| |||||||||| |||||    
T  476490 gggtgtgggaggaggagttggtagaggagtgtaggcaattacttaatggtgttgtttt 476433  T

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