View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7394_high_2 (Length: 420)

Name: NF7394_high_2
Description: NF7394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7394_high_2
NF7394_high_2
[»] chr8 (7 HSPs)
chr8 (14-184)||(4619651-4619821)
chr8 (261-402)||(4619898-4620039)
chr8 (261-332)||(4787460-4787531)
chr8 (118-171)||(1846555-1846608)
chr8 (130-184)||(4297560-4297614)
chr8 (24-66)||(4787676-4787718)
chr8 (24-66)||(4297454-4297496)
[»] chr1 (20 HSPs)
chr1 (32-183)||(38138009-38138160)
chr1 (261-346)||(43045208-43045293)
chr1 (261-346)||(43045661-43045746)
chr1 (261-346)||(43066661-43066746)
chr1 (261-346)||(43084089-43084174)
chr1 (21-171)||(3300703-3300853)
chr1 (21-184)||(43044969-43045133)
chr1 (21-184)||(43066858-43067022)
chr1 (261-332)||(45983706-45983777)
chr1 (21-183)||(43083813-43083976)
chr1 (21-63)||(45983965-45984007)
chr1 (118-171)||(7891113-7891166)
chr1 (21-66)||(43076832-43076877)
chr1 (261-324)||(45993500-45993563)
chr1 (118-184)||(40034841-40034907)
chr1 (261-297)||(40034727-40034763)
chr1 (21-60)||(50912348-50912387)
chr1 (117-171)||(7888848-7888902)
chr1 (120-178)||(50912450-50912508)
chr1 (261-330)||(3300945-3301013)
[»] chr4 (2 HSPs)
chr4 (261-357)||(4231681-4231777)
chr4 (21-66)||(4231434-4231479)
[»] chr2 (7 HSPs)
chr2 (21-66)||(33860810-33860855)
chr2 (21-184)||(34690815-34690978)
chr2 (21-184)||(34713227-34713390)
chr2 (32-184)||(16232167-16232319)
chr2 (261-321)||(34691041-34691101)
chr2 (261-321)||(34713453-34713513)
chr2 (261-297)||(16232384-16232420)
[»] chr5 (2 HSPs)
chr5 (22-69)||(16349117-16349164)
chr5 (261-332)||(16349353-16349424)
[»] chr7 (1 HSPs)
chr7 (21-65)||(39242536-39242580)


Alignment Details
Target: chr8 (Bit Score: 150; Significance: 4e-79; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 4619651 - 4619821
Alignment:
Q  14 agaagaacgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctccaaaaagtgtgaaaaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  4619651 agaagaacgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaatttttttagggttatagccaatcctctccaaaaagtgtgaaaaa 4619750  T
Q  114 cctttcacaaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaagatagatg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4619751 cctttcacaaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaagatagatg 4619821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 261 - 402
Target Start/End: Original strand, 4619898 - 4620039
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgacgaaccctagaaatagcagtttcaaagtc 360  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  4619898 ccttgttgtagcagcagatcatttgcttcacaccaagggttaaagcaaggacagcatgttcatggatctgacgaaccctagaaatagcagtttcagagtc 4619997  T
Q  361 agatccaatagtagtagaatcatatacgagaacagcacagtc 402  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  4619998 agatccaatagtagtagaatcatatacgagaacagcacagtc 4620039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 4787531 - 4787460
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgac 332  Q
    ||||||||||||||||||||||||||||||||||||  ||||| || || | |||||||||| || ||||||    
T  4787531 ccttgttgcagcagcagatcatttgcttcacaccaacagtgaaggcaagaagagcatgttcaagggtctgac 4787460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 1846555 - 1846608
Alignment:
Q  118 tcacaaattcttcatacctatacttggagtatttgggtgcagtggcatccatct 171  Q
    |||||| || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  1846555 tcacaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 1846608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 4297560 - 4297614
Alignment:
Q  130 catacctatacttggagtatttgggtgcagtggcatccatctatcaagatagatg 184  Q
    ||||||||| | ||||||||||||||| |||||||||||||| | ||||||||||    
T  4297560 catacctatccatggagtatttgggtgtagtggcatccatctgtgaagatagatg 4297614  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 4787718 - 4787676
Alignment:
Q  24 tcaatcaagttatctccctcaaaaccagagatgggaacaaatg 66  Q
    ||||||||||||||||| ||||||| |||||||||||||||||    
T  4787718 tcaatcaagttatctccatcaaaactagagatgggaacaaatg 4787676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 4297454 - 4297496
Alignment:
Q  24 tcaatcaagttatctccctcaaaaccagagatgggaacaaatg 66  Q
    ||||||||||||||||| ||||||| ||||||||||| |||||    
T  4297454 tcaatcaagttatctccgtcaaaactagagatgggaataaatg 4297496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 38138160 - 38138009
Alignment:
Q  32 gttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctc-caaaaagtgtgaaaaacctttcacaaattcttc 130  Q
    ||||||||||||||||||||||||||||||||||| ||         |||||||||||| | ||   ||||||| |||||||  | ||||||| ||||||    
T  38138160 gttatctccctcaaaaccagagatgggaacaaatggaatttcatctaggttatagccaa-catcaatcaaaaagggtgaaaattccttcacaatttcttc 38138062  T
Q  131 atacctatacttggagtatttgggtgcagtggcatccatctatcaagatagat 183  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||| ||||||    
T  38138061 atacctatccttggagtatttgggtgtagtggcatccatctgtcaatatagat 38138009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 43045208 - 43045293
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgacgaaccctagaaata 346  Q
    |||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||| | || ||||||||    
T  43045208 ccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaata 43045293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 43045661 - 43045746
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgacgaaccctagaaata 346  Q
    |||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||| | || ||||||||    
T  43045661 ccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaata 43045746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 43066746 - 43066661
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgacgaaccctagaaata 346  Q
    |||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||| | || ||||||||    
T  43066746 ccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaata 43066661  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 43084089 - 43084174
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgacgaaccctagaaata 346  Q
    |||||||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||||| |||||| | || ||||||||    
T  43084089 ccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaata 43084174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 3300703 - 3300853
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctccaaaaagtgtgaaaaacctttca 120  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| ||        ||||||||||||| | ||| |||| ||  |||||   | ||||    
T  3300703 cgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttca 3300802  T
Q  121 caaattcttcatacctatacttggagtatttgggtgcagtggcatccatct 171  Q
    ||| |||||||||||||  ||| ||||| || |||| ||||||||||||||    
T  3300803 caatttcttcatacctacccttcgagtacttaggtgtagtggcatccatct 3300853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 43044969 - 43045133
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctccaaaaagtgtgaaaaacctttca 120  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| ||        ||||||||||||| | ||| |||| ||  |||||   | ||||    
T  43044969 cgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttca 43045068  T
Q  121 caaattcttcatacctatacttggagtatttgggtgcagtggcatccatct-atcaagatagatg 184  Q
    ||| ||| ||||| |||  ||||||||| ||||||| ||| ||||||||||  ||||||||||||    
T  43045069 caatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgttcaagatagatg 43045133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 43067022 - 43066858
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctccaaaaagtgtgaaaaacctttca 120  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| ||        ||||||||||||| | ||| |||| ||  |||||   | ||||    
T  43067022 cgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttca 43066923  T
Q  121 caaattcttcatacctatacttggagtatttgggtgcagtggcatccatct-atcaagatagatg 184  Q
    ||| ||| ||||| |||  ||||||||| ||||||| ||| ||||||||||  ||||||||||||    
T  43066922 caatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgttcaagatagatg 43066858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 332
Target Start/End: Complemental strand, 45983777 - 45983706
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgac 332  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| || || | ||||||||||||| ||||||    
T  45983777 ccttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgac 45983706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 43083813 - 43083976
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctccaaaaagtgtgaaaaacctttca 120  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||| ||        ||||||||||||| | ||| |||| ||  |||||   | ||||    
T  43083813 cgctcgatcatgttatctccctcaaaaccagagatgggaacaaatggaattttgtctgggttatagccaaccttcttcaaataggatgaaacttccttca 43083912  T
Q  121 caaattcttcatacctatacttggagtatttgggtgcagtggcatccatct-atcaagatagat 183  Q
    ||| ||| ||||| |||  ||||||||| ||||||| ||| ||||||||||  |||||||||||    
T  43083913 caatttcatcatatctacccttggagtacttgggtgtagtagcatccatctgttcaagatagat 43083976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 45984007 - 45983965
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaa 63  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  45984007 cgctcaatcaagttatctccctcaaaaccagagatgggaacaa 45983965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 7891166 - 7891113
Alignment:
Q  118 tcacaaattcttcatacctatacttggagtatttgggtgcagtggcatccatct 171  Q
    |||||| || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  7891166 tcacaatttgttcatacctatccttggagtatttgggtgtagtggcatccatct 7891113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 43076877 - 43076832
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatg 66  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||    
T  43076877 cgctcgatcatgttatctccctcaaaaccagagatgggaacaaatg 43076832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 324
Target Start/End: Complemental strand, 45993563 - 45993500
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacg 324  Q
    ||||||||||||| ||||||||||| ||||||||||| ||||| || || | ||||||||||||    
T  45993563 ccttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacg 45993500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Complemental strand, 40034907 - 40034841
Alignment:
Q  118 tcacaaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaagatagatg 184  Q
    |||||| ||||||| |||||  ||| ||||||||||||| ||| |||||||||| ||||||||||||    
T  40034907 tcacaagttcttcaaacctacccttagagtatttgggtgtagttgcatccatctgtcaagatagatg 40034841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 297
Target Start/End: Complemental strand, 40034763 - 40034727
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaag 297  Q
    ||||||||||||||||||||||||| |||||||||||    
T  40034763 ccttgttgcagcagcagatcatttgattcacaccaag 40034727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 50912348 - 50912387
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaa 60  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  50912348 cgctcaatgatgttatctccctcaaaaccagagatgggaa 50912387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 7888902 - 7888848
Alignment:
Q  117 ttcacaaattcttcatacctatacttggagtatttgggtgcagtggcatccatct 171  Q
    ||||||| |||||||||||| | || ||||||| |||||| ||||||||||||||    
T  7888902 ttcacaatttcttcatacctgtcctaggagtatatgggtgtagtggcatccatct 7888848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 50912450 - 50912508
Alignment:
Q  120 acaaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaaga 178  Q
    |||| |||||||||||||  ||||||||||||||| | ||| |||||||||| ||||||    
T  50912450 acaatttcttcatacctacccttggagtatttgggagtagtagcatccatctgtcaaga 50912508  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 330
Target Start/End: Original strand, 3300945 - 3301013
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctg 330  Q
    |||||||||||||  | |||||||||||||||||||| |||||||| || | ||| ||||||||| ||||    
T  3300945 ccttgttgcagcaaaa-atcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctg 3301013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 4231681 - 4231777
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgacgaaccctagaaatagcagtttcaaa 357  Q
    |||||||||||||||||||||||||| |||||||||| |||||||| |||| ||||||||||||  |||||| | || | |||||| ||| ||||||    
T  4231681 ccttgttgcagcagcagatcatttgcctcacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagcttcaaa 4231777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 4231434 - 4231479
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatg 66  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  4231434 cgctcaatcatgttatctccctcaaaaccagagatgggaacaaatg 4231479  T

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Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 66
Target Start/End: Original strand, 33860810 - 33860855
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatg 66  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  33860810 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatg 33860855  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 34690815 - 34690978
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctccaaaaagtgtgaaaaacctttca 120  Q
    |||||||| | ||||||||||| | ||||||||||||||||||||| ||        | |||||| |||||||||  ||||  | ||||||  || ||||    
T  34690815 cgctcaatgatgttatctcccttataaccagagatgggaacaaatggaattttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttca 34690914  T
Q  121 caaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaagatagatg 184  Q
    ||| |  ||||||||||| ||||||||||||||||| | ||||||||||||   ||||||||||    
T  34690915 caattagttcatacctatccttggagtatttgggtgtaatggcatccatctgcgaagatagatg 34690978  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 34713227 - 34713390
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctccaaaaagtgtgaaaaacctttca 120  Q
    |||||||| | ||||||||||| | ||||||||||||||||||||| ||        | |||||| |||||||||  ||||  | ||||||  || ||||    
T  34713227 cgctcaatgatgttatctcccttataaccagagatgggaacaaatggaattttatctgtgttataaccaatcctcatcaaagcgggtgaaattcccttca 34713326  T
Q  121 caaattcttcatacctatacttggagtatttgggtgcagtggcatccatctatcaagatagatg 184  Q
    ||| |  ||||||||||| ||||||||||||||||| | ||||||||||||   ||||||||||    
T  34713327 caattagttcatacctatccttggagtatttgggtgtaatggcatccatctgcgaagatagatg 34713390  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 16232167 - 16232319
Alignment:
Q  32 gttatctccctcaaaaccagagatgggaacaaatgtaannnnnnnagggttatagccaatcctctccaaaaagtgtgaaaaacctttcacaaattcttca 131  Q
    |||||||| || ||||||||||||||||||||||| ||       || |||||| |||||||||  ||||  | ||||||  || ||||||| | |||||    
T  16232167 gttatctcacttaaaaccagagatgggaacaaatggaatatcatcagcgttataaccaatcctcgtcaaagcgggtgaaactcccttcacaattacttca 16232266  T
Q  132 tacctatacttggagtatttgggtgcagtggcatccatctatcaagatagatg 184  Q
    || || | |||||||||||| |||| |||||||| ||||| | ||||||||||    
T  16232267 tatctgtccttggagtatttcggtgtagtggcattcatctgtgaagatagatg 16232319  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 34691041 - 34691101
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttc 321  Q
    |||||||||||||||||||||||||| |||||||||| ||||| || || | |||||||||    
T  34691041 ccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttc 34691101  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 321
Target Start/End: Original strand, 34713453 - 34713513
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttc 321  Q
    |||||||||||||||||||||||||| |||||||||| ||||| || || | |||||||||    
T  34713453 ccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttc 34713513  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 16232384 - 16232420
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaag 297  Q
    |||||||||||||||||||||||||| ||||||||||    
T  16232384 ccttgttgcagcagcagatcatttgcctcacaccaag 16232420  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 22 - 69
Target Start/End: Original strand, 16349117 - 16349164
Alignment:
Q  22 gctcaatcaagttatctccctcaaaaccagagatgggaacaaatgtaa 69  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||    
T  16349117 gctcaaccaagttatctccctcaaaaccagagatgggaacaaatgtaa 16349164  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 16349353 - 16349424
Alignment:
Q  261 ccttgttgcagcagcagatcatttgcttcacaccaagggtgaaagcgaggacagcatgttcacggatctgac 332  Q
    |||||||||||||||||||||||||||| |||||||| | | ||||  ||| ||||||||||||||||||||    
T  16349353 ccttgttgcagcagcagatcatttgcttgacaccaagagagtaagcatggagagcatgttcacggatctgac 16349424  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 39242580 - 39242536
Alignment:
Q  21 cgctcaatcaagttatctccctcaaaaccagagatgggaacaaat 65  Q
    |||||||||||||||||||| | ||||||||||||||||||||||    
T  39242580 cgctcaatcaagttatctccgttaaaaccagagatgggaacaaat 39242536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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