View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7394_high_4 (Length: 291)
Name: NF7394_high_4
Description: NF7394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7394_high_4 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 4701 - 4960
Alignment:
| Q |
18 |
gtactttgttccatttagttcgtaacataatcatacaccacactttcttactagacagaaggacactgcacttttcttatagcagtaaatctaattacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4701 |
gtactttgttccatttagttcgtaacataatcatacaccacactttcttactagacagaaggacactgcacttttcttatagcagtaaatctaattacaa |
4800 |
T |
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| Q |
118 |
atttagccatatctggagagnnnnnnnagcatccatcattgaaaataattttactaactactcgaagaatttgcagaattattttgcttcacacatgaaa |
217 |
Q |
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| T |
4801 |
atttagccatatttggagagtttttttagcatccatcattgaaaataattttactaactactcgaagaatttgcagaattattttgcttcacacatgaaa |
4900 |
T |
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| Q |
218 |
agaatctctctgaactatagaaaatatgaaatttaattaaattaattaaaagctagcaca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4901 |
agaatctctctgaactatagaaaatatgaaatttaattaaattaattaaaagctagcaca |
4960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 42900728 - 42900987
Alignment:
| Q |
18 |
gtactttgttccatttagttcgtaacataatcatacaccacactttcttactagacagaaggacactgcacttttcttatagcagtaaatctaattacaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42900728 |
gtactttgttccatttagttcgtaacataatcatacaccacactttcttactagacagaaggacactgcacttttcttatagcagtaaatctaattacaa |
42900827 |
T |
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| Q |
118 |
atttagccatatctggagagnnnnnnnagcatccatcattgaaaataattttactaactactcgaagaatttgcagaattattttgcttcacacatgaaa |
217 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42900828 |
atttagccatatttggagagtttttttagcatccatcattgaaaataattttactaactactcgaagaatttgcagaattattttgcttcacacatgaaa |
42900927 |
T |
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| Q |
218 |
agaatctctctgaactatagaaaatatgaaatttaattaaattaattaaaagctagcaca |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42900928 |
agaatctctctgaactatagaaaatatgaaatttaattaaattaattaaaagctagcaca |
42900987 |
T |
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