View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7394_high_5 (Length: 276)
Name: NF7394_high_5
Description: NF7394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7394_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 34616062 - 34616177
Alignment:
| Q |
13 |
atgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatccattcgtgaaatacaaactaagattaattttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616062 |
atgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatccattcgtgaaatacaaactaagattaattttg |
34616161 |
T |
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| Q |
113 |
atgagtaaaactcctt |
128 |
Q |
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|||||||||||||||| |
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| T |
34616162 |
atgagtaaaactcctt |
34616177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 34743499 - 34743614
Alignment:
| Q |
13 |
atgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatccattcgtgaaatacaaactaagattaattttg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34743499 |
atgaagatgaagccattgatgcttgaagtttaagctccatggaaatgctactgttactatcttctatccattcgtgaaatacaaactaagattaattttg |
34743598 |
T |
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| Q |
113 |
atgagtaaaactcctt |
128 |
Q |
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|||||||||||||||| |
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| T |
34743599 |
atgagtaaaactcctt |
34743614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 62
Target Start/End: Original strand, 11544894 - 11544943
Alignment:
| Q |
13 |
atgaagatgaagccattgatgcttgaagtttaagctccatggaaatgcta |
62 |
Q |
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| T |
11544894 |
atgaagatgaagccattgatgcttgaagtttaagctacatggaaatgcta |
11544943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 34758610 - 34758655
Alignment:
| Q |
13 |
atgaagatgaagccattgatgcttgaagtttaagctccatggaaat |
58 |
Q |
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| T |
34758610 |
atgaagatgaagccattgatgcttgaagtttaagctccatggaaat |
34758655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 151 - 254
Target Start/End: Complemental strand, 17439671 - 17439568
Alignment:
| Q |
151 |
gactggaagatatttcattcaactagaataaagagagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaa |
250 |
Q |
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| T |
17439671 |
gactggaagatatttcattcaactagaataaagagagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaa |
17439572 |
T |
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| Q |
251 |
ctaa |
254 |
Q |
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|||| |
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| T |
17439571 |
ctaa |
17439568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 30019295 - 30019365
Alignment:
| Q |
184 |
agagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaactaa |
254 |
Q |
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| T |
30019295 |
agagtccatacaaacagttgctgcaatttgatcaggggcacaatccacccatgatttagaacccaaactaa |
30019365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 30041400 - 30041330
Alignment:
| Q |
184 |
agagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaactaa |
254 |
Q |
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| T |
30041400 |
agagtccatacaaacagttgctgcaatttgatcaggggcacaatccacccatgatttagaacccaaactaa |
30041330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 30235538 - 30235468
Alignment:
| Q |
184 |
agagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttagaacctaaactaa |
254 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||| ||||||| |
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| T |
30235538 |
agagtccatacaaacagttgctgcaatttgatcaggggcacaatccacccatgatttagaacccaaactaa |
30235468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 243
Target Start/End: Original strand, 15055547 - 15055627
Alignment:
| Q |
163 |
tttcattcaactagaataaagagagtccatacaaacagttgctacaatttgatcaggggcacaacccacccaagatttaga |
243 |
Q |
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|||||||||| ||||| ||||||| | | |||||||| | ||| ||||||||||||| | |||||||||||||||| |||| |
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| T |
15055547 |
tttcattcaattagaagaaagagaattcttacaaacaatggctgcaatttgatcaggagtacaacccacccaagatctaga |
15055627 |
T |
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