View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7394_low_3 (Length: 326)
Name: NF7394_low_3
Description: NF7394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7394_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 18773610 - 18773304
Alignment:
| Q |
11 |
tcgaagaatatttgaccgtttgatatatgaatcatttgtggaatattaattatgttttttgtcaaactaaataatttagcatataaatacaccatcactg |
110 |
Q |
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| T |
18773610 |
tcgaataatatttgaccgtttaatatatgaatcatttttggaatattaattattttttttgtcaaactaaataatttggcatataaatacaccatcactg |
18773511 |
T |
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| Q |
111 |
tttcctcaaaacactaccaa----------attaacttagcaaagaaaagaattgtttactaatggcaaaccacatctcaaatttcttttatttctttgt |
200 |
Q |
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| T |
18773510 |
tgtcctcaaaacactaccaagccaaaagaaattaacttagcaaagaaaagaattgtttactaatggcaaaccacatctcaaatttcttttatttctttgt |
18773411 |
T |
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| Q |
201 |
catcctagccaccattgcagcaggtaattataactttcttcaacnnnnnnnnnatgttaattaattttcaaatgataaacatctaattatttttctctct |
300 |
Q |
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| T |
18773410 |
catcctaaccaccattgctgcaggtaattataagtttcttcaac--cttttttatgttaattaattttcaaatgataaacatctaattatttttctctct |
18773313 |
T |
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| Q |
301 |
aatatattt |
309 |
Q |
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| T |
18773312 |
aatatattt |
18773304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 74 - 277
Target Start/End: Complemental strand, 18762757 - 18762546
Alignment:
| Q |
74 |
aaactaaataatttagcatataaatacaccatcactgtttcctcaaaacactaccaa----------attaacttagcaaagaaaagaattgtttactaa |
163 |
Q |
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| T |
18762757 |
aaacaaaataatttggcatataaatacaccatcactgtgtcctcaaaacactagcaagccaaaagaaattaacttagcaaagaaaagaattgtttactaa |
18762658 |
T |
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| Q |
164 |
tggcaaaccacatctcaaatttcttttatttctttgtcatcctagccaccattgcagcaggtaattataactttcttcaacnnnnnnnnnatgttaatta |
263 |
Q |
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| T |
18762657 |
tggcaaaccacatctcaaatttcttttatttctttgtcatcctagccaccattgctgcaggtaattataagtttcttcaac--cttttttatgttaatta |
18762560 |
T |
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| Q |
264 |
attttcaaatgata |
277 |
Q |
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|||||||||||||| |
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| T |
18762559 |
attttcaaatgata |
18762546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 18790488 - 18790423
Alignment:
| Q |
162 |
aatggcaaaccacatctcaaatttcttttatttctttgtcatcctagccaccattgcagcaggtaa |
227 |
Q |
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| T |
18790488 |
aatggcaaaccacttctcaaacttgtttaatatccttgtcattctagctaccattgccgcaggtaa |
18790423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 19646877 - 19646948
Alignment:
| Q |
147 |
aaagaattgtttactaatggcaaaccacatctcaaatttcttttatttctttgtcatcctagccaccattgc |
218 |
Q |
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| T |
19646877 |
aaagaattgtttactaatggcaaaccacatctcaaatttcttttatttctttgtcatcctagccaccattgc |
19646948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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