View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7394_low_5 (Length: 279)

Name: NF7394_low_5
Description: NF7394
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7394_low_5
NF7394_low_5
[»] chr1 (4 HSPs)
chr1 (4-261)||(6458150-6458406)
chr1 (77-139)||(3073985-3074049)
chr1 (16-91)||(30626519-30626592)
chr1 (18-124)||(31873792-31873898)
[»] chr3 (3 HSPs)
chr3 (6-91)||(40413560-40413643)
chr3 (46-91)||(17762975-17763020)
chr3 (46-91)||(19064295-19064340)
[»] chr2 (2 HSPs)
chr2 (59-177)||(33276166-33276286)
chr2 (43-85)||(20004163-20004205)
[»] chr6 (2 HSPs)
chr6 (3-90)||(2987752-2987837)
chr6 (47-112)||(6040357-6040424)
[»] chr7 (4 HSPs)
chr7 (41-88)||(23826416-23826463)
chr7 (48-80)||(9605423-9605455)
chr7 (48-80)||(9832994-9833026)
chr7 (46-139)||(27601763-27601858)
[»] chr8 (3 HSPs)
chr8 (41-163)||(32734666-32734788)
chr8 (91-175)||(4331477-4331561)
chr8 (92-139)||(28993070-28993117)
[»] chr5 (2 HSPs)
chr5 (42-91)||(2816418-2816467)
chr5 (91-179)||(14852330-14852418)
[»] chr4 (1 HSPs)
chr4 (42-139)||(48805243-48805342)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 6458406 - 6458150
Alignment:
Q  4 aataaccaccactaggatctagcctccaatgccactgatatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctacacccctaacagctc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6458406 aataaccaccactaggatctagcctccaatgccactgatatatgtagaattatgctgcaaggaaatatcgtgaagtaaaatcctacacccctaacagctc 6458307  T
Q  104 ctcctcccaagtccacaaccgacgacgccattgccaggccatccctccttcctcccaccccaaatcgcacatatccaccaccgaaaccttaatttgattg 203  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  6458306 cttctcccaagtccacaaccgacgacgccattgccaggccatccctcctttctcccaccccaaatcacacatatccaccacc-aaaccttaatttgattg 6458208  T
Q  204 aatactaaaaaatgagaccgtggtttaatggtttaataggattgcctccatgtgaaac 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6458207 aatactaaaaaatgagaccgtggtttaatggtttaataggattgcctccatgtgaaac 6458150  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 3073985 - 3074049
Alignment:
Q  77 agtaaaatcctacac--ccctaacagctcctcctcccaagtccacaaccgacgacgccattgcca 139  Q
    |||||||||||||||  |||||||| |||||||||||| | ||||||||| | ||||||||||||    
T  3073985 agtaaaatcctacactcccctaacaactcctcctcccaggcccacaaccgcctacgccattgcca 3074049  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 30626519 - 30626592
Alignment:
Q  16 taggatctagcctccaatgccactgatatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctacac 91  Q
    ||||||| |||| ||| |||||||||| |  |||||||| |  |||||||||||||||||||||||||||| ||||    
T  30626519 taggatcaagccgccattgccactgatct--gtagaattttattgcaaagaaatatcgtgaagtaaaatccaacac 30626592  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 31873898 - 31873792
Alignment:
Q  18 ggatctagcctccaatgccactgatatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctacac--ccctaacagctcctcctcccaagt 115  Q
    ||||| |||||||||  |||||||| |  |||||||| |||||||||||||| ||    |||||||||||||||  |||||||| ||| |||||||||      
T  31873898 ggatcaagcctccaaacccactgatct--gtagaattttgctgcaaagaaatgtcagatagtaaaatcctacactgccctaacaactcatcctcccaaac 31873801  T
Q  116 ccacaaccg 124  Q
    |||||||||    
T  31873800 ccacaaccg 31873792  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 40413643 - 40413560
Alignment:
Q  6 taaccaccactaggatctagcctccaatgccactgatatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctacac 91  Q
    ||||| ||| ||||||| |||| ||| ||||||||||||  |||||||||| ||||||||||||||||||||||||||| ||||||    
T  40413643 taaccgccaataggatcaagccgccactgccactgatat--gtagaattatactgcaaagaaatatcgtgaagtaaaattctacac 40413560  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 17763020 - 17762975
Alignment:
Q  46 tgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctacac 91  Q
    |||||||||||   ||||||||||||||||||||||||| ||||||    
T  17763020 tgtagaattatatcgcaaagaaatatcgtgaagtaaaattctacac 17762975  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 19064340 - 19064295
Alignment:
Q  46 tgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctacac 91  Q
    |||||||||||   ||||||||||||||||||||||||| ||||||    
T  19064340 tgtagaattatatcgcaaagaaatatcgtgaagtaaaattctacac 19064295  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 177
Target Start/End: Complemental strand, 33276286 - 33276166
Alignment:
Q  59 tgcaaagaaatatcgtgaagtaaaatcctacacccct--aacagctcctcctcccaagtccacaaccgacgacgccattgccaggccatccctccttcct 156  Q
    |||||||||||||| ||||||||| |||||||| |||  ||||  ||||||||||| | | |||||||||||||||| ||||| |||   ||||||||||    
T  33276286 tgcaaagaaatatcatgaagtaaagtcctacactcctttaacaattcctcctcccatgcctacaaccgacgacgccactgccaagccgcacctccttcct 33276187  T
Q  157 cccaccccaaatcgcacatat 177  Q
    ||||||| ||| | |||||||    
T  33276186 cccaccctaaaccacacatat 33276166  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 20004163 - 20004205
Alignment:
Q  43 atatgtagaattatgctgcaaagaaatatcgtgaagtaaaatc 85  Q
    |||||||||||||| ||||||||||||||| ||||||||||||    
T  20004163 atatgtagaattatactgcaaagaaatatcttgaagtaaaatc 20004205  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 2987837 - 2987752
Alignment:
Q  3 gaataaccaccactaggatctagcctccaatgccactgatatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctaca 90  Q
    |||||||||| | ||||||| | ||  || ||||||||||||  ||||||||| | ||||||||||||||||||||||||||||||||    
T  2987837 gaataaccactaataggatcaatccgtcactgccactgatat--gtagaattaagttgcaaagaaatatcgtgaagtaaaatcctaca 2987752  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 6040357 - 6040424
Alignment:
Q  47 gtagaattatgctgcaaagaaatatcgtgaagtaaaatcctaca--cccctaacagctcctcctccca 112  Q
    |||||||||| ||||||||||||  | ||||| |||||||||||  ||||||| ||||| ||||||||    
T  6040357 gtagaattattctgcaaagaaatggcatgaagcaaaatcctacactcccctaagagctcatcctccca 6040424  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 23826463 - 23826416
Alignment:
Q  41 atatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatccta 88  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  23826463 atatatgtagaattatgttgcaaagaagtatcgtgaagtaaaatccta 23826416  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 9605455 - 9605423
Alignment:
Q  48 tagaattatgctgcaaagaaatatcgtgaagta 80  Q
    |||||||||||||||||||||||||||||||||    
T  9605455 tagaattatgctgcaaagaaatatcgtgaagta 9605423  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 9833026 - 9832994
Alignment:
Q  48 tagaattatgctgcaaagaaatatcgtgaagta 80  Q
    |||||||||||||||||||||||||||||||||    
T  9833026 tagaattatgctgcaaagaaatatcgtgaagta 9832994  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 139
Target Start/End: Complemental strand, 27601858 - 27601763
Alignment:
Q  46 tgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctaca--cccctaacagctcctcctcccaagtccacaaccgacgacgccattgcca 139  Q
    |||| |||||||||||| ||||| ||  |||||||||||| ||||  ||||||||  |||||||||||| | |||||||| ||| ||||| |||||    
T  27601858 tgtacaattatgctgcagagaaaaattatgaagtaaaatcttacactcccctaacttctcctcctcccacgcccacaacctacgccgccactgcca 27601763  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 163
Target Start/End: Original strand, 32734666 - 32734788
Alignment:
Q  41 atatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctaca--cccctaacagctcctcctcccaagtccacaaccgacgacgccattgcc 138  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  |||  || ||||||  ||||||||||||| |||  | ||| | ||||||||||    
T  32734666 atatatgtagaattatgctgcaaagaaatatcgtg-agtaaaatcacacactcctctaacaagtcctcctcccaagcccattatcgaag-cgccattgcc 32734763  T
Q  139 aggccatccctccttcctcccaccc 163  Q
    || ||  ||| || |||||||||||    
T  32734764 agaccgccccaccatcctcccaccc 32734788  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 4331477 - 4331561
Alignment:
Q  91 cccctaacagctcctcctcccaagtccacaaccgacgacgccattgccaggccatccctccttcctcccaccccaaatcgcacat 175  Q
    ||||||||| ||||||||| || | ||||||||| |  | ||| ||||| |||| ||||||||||||||| ||||||||||||||    
T  4331477 cccctaacatctcctcctctcacgcccacaaccgccaccaccactgccaagccacccctccttcctcccatcccaaatcgcacat 4331561  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 28993117 - 28993070
Alignment:
Q  92 ccctaacagctcctcctcccaagtccacaaccgacgacgccattgcca 139  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||    
T  28993117 ccctaacaactcctcctcccaagtccacaaccgccgacgccactgcca 28993070  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 2816467 - 2816418
Alignment:
Q  42 tatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctacac 91  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||    
T  2816467 tatatgtagaattatactgcaaagaaatatcatgaagtaaaaccctacac 2816418  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 14852418 - 14852330
Alignment:
Q  91 cccctaacagctcctcctcccaagtccacaaccgacgacgccattgccaggccatccctccttcctcccaccccaaatcgcacatatcc 179  Q
    |||||||||| |||||||||| |  ||||||||| || ||||| ||||| |||  ||| || ||||||||||| ||| |||||||||||    
T  14852418 cccctaacagttcctcctccccaacccacaaccggcggcgccactgccaagccgccccaccatcctcccaccctaaaccgcacatatcc 14852330  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 48805243 - 48805342
Alignment:
Q  42 tatatgtagaattatgctgcaaagaaatatcgtgaagtaaaatcctaca--cccctaacagctcctcctcccaagtccacaaccgacgacgccattgcca 139  Q
    ||||||||||||| |||||||||||||| ||    | ||||||||||||  ||||||||| || ||||| ||||| ||||||| | || |||||||||||    
T  48805243 tatatgtagaattttgctgcaaagaaatgtcaaataataaaatcctacactcccctaacaacttctccttccaagcccacaactgccggcgccattgcca 48805342  T

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