View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7395_low_3 (Length: 545)

Name: NF7395_low_3
Description: NF7395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7395_low_3
NF7395_low_3
[»] chr3 (8 HSPs)
chr3 (367-538)||(531081-531252)
chr3 (367-538)||(564036-564207)
chr3 (17-174)||(564506-564663)
chr3 (17-174)||(531925-532082)
chr3 (172-307)||(564267-564402)
chr3 (228-308)||(531311-531391)
chr3 (172-227)||(531732-531787)
chr3 (210-270)||(46506160-46506220)
[»] chr7 (4 HSPs)
chr7 (213-305)||(34955422-34955514)
chr7 (230-311)||(3756679-3756761)
chr7 (396-485)||(32471249-32471336)
chr7 (234-310)||(42863834-42863910)
[»] chr8 (1 HSPs)
chr8 (368-468)||(32848033-32848131)
[»] chr5 (1 HSPs)
chr5 (368-483)||(34272289-34272402)
[»] chr1 (1 HSPs)
chr1 (372-448)||(49138139-49138212)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 1e-82; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 367 - 538
Target Start/End: Complemental strand, 531252 - 531081
Alignment:
Q  367 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccat 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  531252 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccat 531153  T
Q  467 ttgccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttcatttc 538  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  531152 ttgccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttcttttc 531081  T

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Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 367 - 538
Target Start/End: Complemental strand, 564207 - 564036
Alignment:
Q  367 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccat 466  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  564207 cttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttgattttaggatcgttagccgcatgtccat 564108  T
Q  467 ttgccaaaaccaattatatcaagcttctttgtattttcaaattaaaaaatggatatgcaccttcttcatttc 538  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||    
T  564107 ttgccaaaaccaattatatcaagcttctttgtatttttcaattaaaaaatggatatgcaccttcttcttttc 564036  T

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Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 564663 - 564506
Alignment:
Q  17 aatatgtaagtctaagcttgaataattgaagaactatattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagact 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  564663 aatatgtaagtctaagcttgaataattgaagaactaaattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagact 564564  T
Q  117 cattcttgacaaagctgctcctaaaactttgaagttttgtaaaagtaatcatttgata 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  564563 cattcttgacaaagctgctcctaaaactttgaagttttgtaaaagtaatcatttgata 564506  T

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Target: chr3; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 532082 - 531925
Alignment:
Q  17 aatatgtaagtctaagcttgaataattgaagaactatattgtgaaagcaagaaggtgagtcgttcttgatagagtctatagtgaaagcaagaagcagact 116  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  532082 aatatgtaagtctaagattgaataattgaagaactaaattgtgaaagaaagaaggtgcgtcgttcttaatagagtctatagtgaaagcaagaagcagact 531983  T
Q  117 cattcttgacaaagctgctcctaaaactttgaagttttgtaaaagtaatcatttgata 174  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  531982 cattcttgacaaagctgctcctaaaacttcgaagttttgtaaaagtaatcatttgata 531925  T

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Target: chr3; HSP #5
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 172 - 307
Target Start/End: Complemental strand, 564402 - 564267
Alignment:
Q  172 atatcctaatcaataatccaattgtctgtaagagttcccacaattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaattt 271  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  564402 atatcctaatcaataatccaattgtctgtaagagttacaacaattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaattt 564303  T
Q  272 gtatatgagaacccaattagatttggtgttcttagt 307  Q
    ||||||||||||||||||||||||||||||||||||    
T  564302 gtatatgagaacccaattagatttggtgttcttagt 564267  T

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Target: chr3; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 228 - 308
Target Start/End: Complemental strand, 531391 - 531311
Alignment:
Q  228 aaatggataattgcaaattaattattgaatgaaatataaaatttgtatatgagaacccaattagatttggtgttcttagta 308  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  531391 aaatggatgattgcaaattaattattgaatgaaatataaaatttgtatatgacaacccaattagatttggtgtccttagta 531311  T

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Target: chr3; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 531787 - 531732
Alignment:
Q  172 atatcctaatcaataatccaattgtctgtaagagttcccacaattgacaatgtaac 227  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||    
T  531787 atatcctagtcaataatcgaattgtcagtaagagttcccacaattgacaatgtaac 531732  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 46506220 - 46506160
Alignment:
Q  210 cacaattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaatt 270  Q
    ||||||||| | ||||| ||||||||| ||| |||||||||||| ||| ||| ||||||||    
T  46506220 cacaattgatagtgtaataaatggatagttggaaattaattattcaatcaaagataaaatt 46506160  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 213 - 305
Target Start/End: Original strand, 34955422 - 34955514
Alignment:
Q  213 aattgacaatgtaacaaatggataattgcaaattaattattgaatgaaatataaaatttgtatatgagaacccaattagatttggtgttctta 305  Q
    ||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||||||||||    
T  34955422 aattggcaatgtaactagtagataattgcaaattaattattgaatgaaatataaaatttataaataagaactcaattggatttggtgttctta 34955514  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 311
Target Start/End: Original strand, 3756679 - 3756761
Alignment:
Q  230 atggataattgcaaattaattattgaatgaaatataaaatttg-tatatgagaacccaattagatttggtgttcttagtacat 311  Q
    ||||||||||||||||| |||||| ||| |||  ||||| ||| || |||||||  |||||||| ||||||||||||||||||    
T  3756679 atggataattgcaaattgattattaaattaaaggtaaaaattgatagatgagaattcaattagagttggtgttcttagtacat 3756761  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 396 - 485
Target Start/End: Original strand, 32471249 - 32471336
Alignment:
Q  396 gatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatttgccaaaaccaattatat 485  Q
    |||||||||||  |||| | |||||||| |||||||||||||| ||||||||||  || |  ||||||||||||||  ||||||| ||||    
T  32471249 gatcatcattt--ctctatttatgcacaatccaagcttccttgattttaggatcactaactacatgtccatttgcctcaaccaataatat 32471336  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 42863910 - 42863834
Alignment:
Q  234 ataattgcaaattaattattgaatgaaatataaaatttgtatatgagaacccaattagatttggtgttcttagtaca 310  Q
    ||||||||||||||||||| |||| ||||||  ||||  || |  |||| ||||||||| ||||| |||||||||||    
T  42863910 ataattgcaaattaattatggaatcaaatattgaattgatagacaagaatccaattagagttggtattcttagtaca 42863834  T

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Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 368 - 468
Target Start/End: Original strand, 32848033 - 32848131
Alignment:
Q  368 ttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatt 467  Q
    ||||||||||||||| ||||||||||| |||||||||||  |||| | |||||||| ||||| |||||||| |||||||||| | |||| ||||| ||||    
T  32848033 ttcatcaattttcttgatacccattattgatcatcattt--ctctatttatgcacaatccaaacttccttgattttaggatcatgagccacatgttcatt 32848130  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 368 - 483
Target Start/End: Complemental strand, 34272402 - 34272289
Alignment:
Q  368 ttcatcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggatcgttagccgcatgtccatt 467  Q
    |||||||||||||||||||||||||||   | |||||||| || |||||  ||||| || |||| |||||| ||||||||||  ||| | ||||||||||    
T  34272402 ttcatcaattttcttcatacccattattatttatcatttttctatttat--gcacaatctaagcatccttgattttaggatcactagtcacatgtccatt 34272305  T
Q  468 tgccaaaaccaattat 483  Q
    | || |||||||||||    
T  34272304 tacctaaaccaattat 34272289  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 372 - 448
Target Start/End: Complemental strand, 49138212 - 49138139
Alignment:
Q  372 tcaattttcttcatacccattatcgatcatcattttcctctttatatgcacattccaagcttccttggttttaggat 448  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||  |||| ||| |||||||||||||  |||||||||    
T  49138212 tcaattttcttcatacccattattgat-atcattttcctatt--tatgtacaatccaagcttcctttattttaggat 49138139  T

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