View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7395_low_4 (Length: 460)
Name: NF7395_low_4
Description: NF7395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7395_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 446
Target Start/End: Original strand, 51736382 - 51736812
Alignment:
| Q |
17 |
aaattttgatgcctctgcccatggcaagaatttgaactctttcattgggcgggctgcacatattgaatttcttgactcagacatttttgcaatgttcata |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51736382 |
aaattttgatgcctctgcccatggcaagaatttgaactctttcattgggcgggctgcacatattgaatttcttgactcagacatttttgcaatgttcata |
51736481 |
T |
|
| Q |
117 |
atgtggtctttcccagatctatttcgatagcacatagcaggtattgtcatttgtcctcacacagagtaaacaatttctgggttcatgaactttaa-atgt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||| |
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| T |
51736482 |
atgtggtctttcccagatctatttcgatagcacatagcaggtattgtcatttgtcctcacacagagtatacaaattctgggttcatgaactttaagatgt |
51736581 |
T |
|
| Q |
216 |
ttatattgaacacagttgtgtacatccataggaagagccaaggacatattggtgtaatcattttagtttagtgtttagtaaaattatttgttgaaatggt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51736582 |
ttatattgaacacagttgtgtacatccataggaagaaccaaggacatattggtgtaatcattttagtttagtgtttagtaaaattatttgttgaaatggt |
51736681 |
T |
|
| Q |
316 |
aatgtgtgtatatatggttcaaaattttcccgttgctatagctaatacaactataattattttcttcttgcatatacaccatattaatatgattttatat |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
51736682 |
aatgtgtatatatatggttcaaaattttcccgttgctatagctaatacaactataattattttcttcttgcatatacaccatattaatatgattttattt |
51736781 |
T |
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| Q |
416 |
aaaataaaatattcattttcgtgtactaagt |
446 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
51736782 |
aaaataaaatattcattttcgtgtactaagt |
51736812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 146
Target Start/End: Original strand, 358911 - 359039
Alignment:
| Q |
18 |
aattttgatgcctctgcccatggcaagaatttgaactctttcattgggcgggctgcacatattgaatttcttgactcagacatttttgcaatgttcataa |
117 |
Q |
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|
||||||||||| ||||| |||| |||||||| ||||||||||| ||||||||||| |||||||| ||||| || || ||||||||||||| |||||||| |
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| T |
358911 |
aattttgatgctactgcctatggaaagaatttaaactctttcatcgggcgggctgctcatattgagtttctggagtctgacatttttgcaaggttcataa |
359010 |
T |
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| Q |
118 |
tgtggtctttcccagatctatttcgatag |
146 |
Q |
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||||||| || ||||| |||||||||||| |
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| T |
359011 |
tgtggtcatttccagaactatttcgatag |
359039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 37847537 - 37847500
Alignment:
| Q |
96 |
gacatttttgcaatgttcataatgtggtctttcccaga |
133 |
Q |
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|||||||| |||| |||||||||||||||||||||||| |
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| T |
37847537 |
gacattttcgcaaagttcataatgtggtctttcccaga |
37847500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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