View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7395_low_5 (Length: 377)
Name: NF7395_low_5
Description: NF7395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7395_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 1496723 - 1496385
Alignment:
| Q |
13 |
aatatggtggtacgtagtagtttgtatgtgtttttatagtagtgcaatttgaactcgatcgtggaaagggacatggttgatattaattggacggtagctt |
112 |
Q |
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| T |
1496723 |
aatatggtggtacgtagtagtttgtatgtgtatttatagtagtgcaatttgaactcgatcgtggaaagggacatggttgatattaattggacggtagctt |
1496624 |
T |
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| Q |
113 |
aacatcgacgttgtttgactaaaacaattttgacatttatggaaagctttcaatatattggactttgatggatatttcgttgggttgagtgtggatattg |
212 |
Q |
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| T |
1496623 |
aacatcgacgttgtttgactaaaacacttttgacatttatggaaagctttcaatatattggactttgatggatatttcgttgggttgagtgtggatattg |
1496524 |
T |
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| Q |
213 |
tatatagacaatagaccatccttttgccttgattctgaaataatatgagactttaaatgtgccaaaagagttgtctctaatcgatgttaagagttcgtgt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1496523 |
tatatagacaatagaccatccttttgccttgattctcaaataatatgagactttaaatgtgccaaaagagttgtctctaatcgatgttaagagttcgtgt |
1496424 |
T |
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| Q |
313 |
gttgtctccctagtgaattcctaaacttttagttccaac |
351 |
Q |
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| T |
1496423 |
gttgtctccctagtgaattcctaaacttttagttccaac |
1496385 |
T |
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