View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7395_low_7 (Length: 330)
Name: NF7395_low_7
Description: NF7395
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7395_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 37058192 - 37057883
Alignment:
| Q |
1 |
taaactactttcaaagtttcaatgatacgggaatataacatatactgtataatgtaactatgtaagtcgcatccaataaatctagcagatcaatgatata |
100 |
Q |
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| T |
37058192 |
taaactactttcaaagtttcaatgatacgagaatataacatatattgtataatgtaactatgtaagtcgcatccaataaatctag---atcaatgatata |
37058096 |
T |
|
| Q |
101 |
ttaacaaccaaaaatctacaaccttgcttccaccaccgtatagattccatcaagcaattctaagcaggcacagatttcaagattgtaagaaatagtaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37058095 |
ttaacaaccaaaaatctacaaccttgcttccaccaccgtatagattccatcaagcaattctaagcatgcacagatttcaagattgtaagaaatagtaaaa |
37057996 |
T |
|
| Q |
201 |
aattaagtttgtacataaaaccgtatcaatatatggtgtgggacaactttttggctgtcaaattatcatttctcataaatctaattattggttagagtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37057995 |
aattaagtttgtacataaaaccgtatcaatatatggtgtgggacaactttttgattgttaaattatcatttctcataaatctaattattggttagagtca |
37057896 |
T |
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| Q |
301 |
aaccgtatgaaac |
313 |
Q |
| |
|
||||||||||||| |
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| T |
37057895 |
aaccgtatgaaac |
37057883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 91 - 274
Target Start/End: Original strand, 19090507 - 19090687
Alignment:
| Q |
91 |
caatgatatattaacaaccaaaaatctacaaccttgcttccaccaccgtatagattccatcaagcaattctaagcaggcacagatttcaagattgtaaga |
190 |
Q |
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|||||||||||| |||| |||||||| ||||||||||| || | |||| || ||||||| |||||||||||| |||| ||||||||||| ||||| |
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| T |
19090507 |
caatgatatattgacaataaaaaatctgcaaccttgcttacaac---gtatgtatcccatcaaacaattctaagcatgcacggatttcaagatggtaagg |
19090603 |
T |
|
| Q |
191 |
aatagtaaaaaattaagtttgtacataaaaccgtatcaatatatggtgtgggacaactttttggctgtcaaattatcatttctc |
274 |
Q |
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|||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
19090604 |
aatattaaaaaattaagtttgtactcaaaaccgtatctatatatggtgtgggacaacttttcggttgtcaaattatcatttctc |
19090687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 28759821 - 28759745
Alignment:
| Q |
199 |
aaaattaagtttgtacataaaaccgtatcaatatatggtgtgggacaactttttggctgtcaaattatcatttctcat |
276 |
Q |
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|||||| ||||||||| |||||| |||||||||||||||||| |||| ||||||| ||| ||||||| ||||||||| |
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| T |
28759821 |
aaaatttagtttgtactcaaaaccatatcaatatatggtgtggaacaa-tttttggttgtgaaattatgatttctcat |
28759745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 27810329 - 27810249
Alignment:
| Q |
194 |
agtaaaaaattaagtttgtacataaaaccgtatcaatatatggtgtgggacaactttttggctgtcaaattatcatttctc |
274 |
Q |
| |
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||||||||||| ||||||||| ||||| ||||||||| | |||| |||||||||||||| |||| | ||||||||||| |
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| T |
27810329 |
agtaaaaaattcagtttgtactgaaaactgtatcaatagacggtggaggacaactttttggttgtccgaatatcatttctc |
27810249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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