View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7396_high_1 (Length: 792)

Name: NF7396_high_1
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7396_high_1
NF7396_high_1
[»] chr1 (7 HSPs)
chr1 (8-776)||(37162547-37163315)
chr1 (645-776)||(37150443-37150574)
chr1 (645-776)||(37159268-37159399)
chr1 (285-414)||(37150213-37150342)
chr1 (285-414)||(37159038-37159167)
chr1 (285-414)||(37155198-37155327)
chr1 (647-727)||(37154852-37154932)
[»] chr7 (1 HSPs)
chr7 (160-383)||(46315021-46315244)
[»] chr4 (4 HSPs)
chr4 (645-760)||(91911-92026)
chr4 (267-414)||(95436-95583)
chr4 (285-414)||(92129-92258)
chr4 (645-760)||(95218-95333)


Alignment Details
Target: chr1 (Bit Score: 728; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 728; E-Value: 0
Query Start/End: Original strand, 8 - 776
Target Start/End: Complemental strand, 37163315 - 37162547
Alignment:
Q  8 agatggacatcaacttattgatgattataagggcgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatgttccttcttgggttggtgat 107  Q
    |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37163315 agatggacgtcgtcttattgatgattataagggcgagtatgtgggtgaacaagttgttgctaaagatgatgttaatgatgttccttcttgggttggtgat 37163216  T
Q  108 ggtttaagtgttggtgttcgaagacttcttcatgtaaatcaacataaactcaaggctaatgtggttgtggctaaagatggtagtggaaagttcaagaaaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37163215 ggtttaagtgttggtgttcgaagacttcttcatgtaaatcaacataaactcaaggctaatgtggttgtggctaaagatggtagtggaaagtttaagaaaa 37163116  T
Q  208 tcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcatatcaaggagggtgtttatcatgagtatgttgaagttactaagaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37163115 tcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttattcatatcaaggagggtgtttatcatgagtatgttgaagttactaagaa 37163016  T
Q  308 aatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaattaacacttaccaaacccccact 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37163015 aatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaattaacacttaccaaacccccact 37162916  T
Q  408 gtcggtacgtgttttagagacgaatttcacatttttctttccttaacatgtcgctatttcagctttttctatgtacaaaactatacatgggaagcaacta 507  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162915 gtcggtacgtgttttagagacgaatttcacaattttctttccttaacatgtcgctatttcagctttttctatgtacaaaactatacatgggaagcaacta 37162816  T
Q  508 taaataaatcaacttaaaaaccagtatgcatggttaataagagatatagtattatgggaattaagtaagaatatgnnnnnnngatcaaagaagaacaata 607  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  37162815 taaataaatcaacttaaaaaccagtatgcatggttaataagagatatagtattatgggaattaagtaagaatatgtttttttgatcaaagaagaacaata 37162716  T
Q  608 tgttaattgcaaaatatattgatgtttatgcctacatattgcagctattgaaggagataactttgtagccatcaatataggattcgagaattcagctgga 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162715 tgttaattgcaaaatatattgatgtttatgcctacatattgcagctattgaaggagataactttgtagccatcaatataggattcgagaattcagctgga 37162616  T
Q  708 cctcaaaaacatcaagcagtagcgataagggtccaagcagacaaggcaatcttttacaaatgttcaatg 776  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37162615 cctcaaaaacatcaagcagtagcgataagggtccaagcagacaaggcaatcttttacaaatgttcaatg 37162547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 645 - 776
Target Start/End: Original strand, 37150443 - 37150574
Alignment:
Q  645 attgcagctattgaaggagataactttgtagccatcaatataggattcgagaattcagctggacctcaaaaacatcaagcagtagcgataagggtccaag 744  Q
    |||||||| ||| |||||||| |||||   ||||| || || || |||||||| |||||||| || ||||||||||||||||| ||  |||| || ||||    
T  37150443 attgcagcaattcaaggagatcactttaccgccattaacatgggtttcgagaactcagctggtccacaaaaacatcaagcagtggcactaagagttcaag 37150542  T
Q  745 cagacaaggcaatcttttacaaatgttcaatg 776  Q
     ||| ||||| ||||| ||||| || ||||||    
T  37150543 gagataaggctatcttctacaattgctcaatg 37150574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 645 - 776
Target Start/End: Original strand, 37159268 - 37159399
Alignment:
Q  645 attgcagctattgaaggagataactttgtagccatcaatataggattcgagaattcagctggacctcaaaaacatcaagcagtagcgataagggtccaag 744  Q
    |||||||| ||| |||||||| |||||   ||||| || || || |||||||| |||||||| || ||||||||||||||||| ||  |||| || ||||    
T  37159268 attgcagcaattcaaggagatcactttaccgccattaacatgggtttcgagaactcagctggtccacaaaaacatcaagcagtggcactaagagttcaag 37159367  T
Q  745 cagacaaggcaatcttttacaaatgttcaatg 776  Q
     ||| ||||| ||||| ||||| || ||||||    
T  37159368 gagataaggctatcttctacaattgctcaatg 37159399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 414
Target Start/End: Original strand, 37150213 - 37150342
Alignment:
Q  285 gagtatgttgaagttactaagaaa-atgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatgga 383  Q
    |||||||||||||||  ||| ||| ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| || ||||||||||| ||||| ||||||    
T  37150213 gagtatgttgaagttt-taacaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcaccggcaacaaaaactttatggatgga 37150311  T
Q  384 attaacacttaccaaacccccactgtcggta 414  Q
     |||  |||||||| ||| ||||||| ||||    
T  37150312 gttacgacttaccacaccgccactgttggta 37150342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 414
Target Start/End: Original strand, 37159038 - 37159167
Alignment:
Q  285 gagtatgttgaagttactaagaaa-atgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatgga 383  Q
    |||||||||||||||  ||| ||| ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| || ||||||||||| ||||| ||||||    
T  37159038 gagtatgttgaagttt-taacaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcaccggcaacaaaaactttatggatgga 37159136  T
Q  384 attaacacttaccaaacccccactgtcggta 414  Q
     |||  |||||||| ||| ||||||| ||||    
T  37159137 gttacgacttaccacaccgccactgttggta 37159167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 414
Target Start/End: Complemental strand, 37155327 - 37155198
Alignment:
Q  285 gagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaa 384  Q
    |||||||||||||||   || || ||||| ||| |||||||| | ||||||||||| || ||| | | ||| |||||||||||||| | ||| ||||||     
T  37155327 gagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcgataatcactggcaacaaaaactatatggatggag 37155228  T
Q  385 ttaacacttaccaaacccccactgtcggta 414  Q
    ||| ||| ||||| ||| ||||||| ||||    
T  37155227 ttaccacctaccataccaccactgttggta 37155198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 647 - 727
Target Start/End: Complemental strand, 37154932 - 37154852
Alignment:
Q  647 tgcagctattgaaggagataactttgtagccatcaatataggattcgagaattcagctggacctcaaaaacatcaagcagt 727  Q
    |||||||||| |||||||| |||||   ||||| || || || || |||||||||||||| || |||||||||||||||||    
T  37154932 tgcagctattcaaggagatcactttaccgccattaacatgggttttgagaattcagctggtccacaaaaacatcaagcagt 37154852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 160 - 383
Target Start/End: Original strand, 46315021 - 46315244
Alignment:
Q  160 aggctaatgtggttgtggctaaagatggtagtggaaagttcaagaaaatcaatgatgctttgaaacaggttccaaagaagaaccaaaaaccttttgttat 259  Q
    ||||| |||| ||||| ||||| ||||| |||||||| ||||  | ||||| ||| ||| | || || ||||| ||||| |||   || || ||||||||    
T  46315021 aggctcatgttgttgttgctaaggatggaagtggaaatttcaccacaatcactgaggctcttaagcatgttcccaagaaaaacttgaagccatttgttat 46315120  T
Q  260 tcatatcaaggagggtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattact 359  Q
    | | |||||||||||||||||| | |||||||||||||||||||| |  |||||||| ||||| ||  | ||||||||||| |  |||||| | |||||     
T  46315121 ttacatcaaggagggtgtttataaagagtatgttgaagttactaaaaccatgactcacgttgttttcatcggtgatggtggtagaaagacacgcattacg 46315220  T
Q  360 ggcaacaaaaattttatagatgga 383  Q
    ||||| ||||| || || ||||||    
T  46315221 ggcaataaaaacttcattgatgga 46315244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 645 - 760
Target Start/End: Complemental strand, 92026 - 91911
Alignment:
Q  645 attgcagctattgaaggagataactttgtagccatcaatataggattcgagaattcagctggacctcaaaaacatcaagcagtagcgataagggtccaag 744  Q
    |||||||||||| |||||||| |||||   ||||| ||||| || || |||||||||||||| || ||||||||||||||||| ||  |||| || ||||    
T  92026 attgcagctattcaaggagatcactttaccgccattaatatgggttttgagaattcagctggtccacaaaaacatcaagcagtggcactaagagttcaag 91927  T
Q  745 cagacaaggcaatctt 760  Q
     ||| ||||| |||||    
T  91926 gagataaggctatctt 91911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 267 - 414
Target Start/End: Complemental strand, 95583 - 95436
Alignment:
Q  267 aaggagggtgtttatcatgagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaaca 366  Q
    ||||| |||||||| |  |||||||||||||||   || || ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| ||||||||||    
T  95583 aaggaaggtgtttaccgagagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcactggcaaca 95484  T
Q  367 aaaattttatagatggaattaacacttaccaaacccccactgtcggta 414  Q
    |||| | ||| |||||| ||| ||| ||||| ||| ||||||| ||||    
T  95483 aaaactatatggatggagttaccacctaccataccaccactgttggta 95436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 285 - 414
Target Start/End: Complemental strand, 92258 - 92129
Alignment:
Q  285 gagtatgttgaagttactaagaaaatgactcatgttgtgtttttgggtgatggtggcaacaagacaagaattactggcaacaaaaattttatagatggaa 384  Q
    |||||||||||||||   || || ||||| ||| |||||||| | ||||||||||| || ||| ||| ||| |||||||||||||| | ||| ||||||     
T  92258 gagtatgttgaagttttaaaaaatatgacacatattgtgtttgttggtgatggtggtaagaagtcaataatcactggcaacaaaaactatatggatggag 92159  T
Q  385 ttaacacttaccaaacccccactgtcggta 414  Q
    ||| ||| ||||| ||| ||||||| ||||    
T  92158 ttaccacctaccataccaccactgttggta 92129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 645 - 760
Target Start/End: Complemental strand, 95333 - 95218
Alignment:
Q  645 attgcagctattgaaggagataactttgtagccatcaatataggattcgagaattcagctggacctcaaaaacatcaagcagtagcgataagggtccaag 744  Q
    |||||||||||| ||| |||| |||||   ||||| || || || || |||||||||||||| || ||||||||||||||||| ||  |||| || ||||    
T  95333 attgcagctattcaagaagatcactttaccgccattaacatgggttttgagaattcagctggtccacaaaaacatcaagcagtggcactaagagttcaag 95234  T
Q  745 cagacaaggcaatctt 760  Q
     ||| ||||| |||||    
T  95233 gagataaggctatctt 95218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University