View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7396_high_2 (Length: 725)
Name: NF7396_high_2
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7396_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 16 - 709
Target Start/End: Complemental strand, 53044034 - 53043341
Alignment:
| Q |
16 |
acatcactgtttcaaatccttccattacgcagattatctgggattttggtcgattggtgctactgactagttcctgtttttaaccagcagaaacccaata |
115 |
Q |
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| T |
53044034 |
acatcactgtttcaaatccttccattacgcggattatctgggattttggtcgattggtgctactgactagttcctgtttttaaccagcagaaacccaata |
53043935 |
T |
|
| Q |
116 |
atcattaacactcctaacaaatgctcaacaataccgagaagtaaagaagagaaattacatctgtagatccacttgcgcttttcctttcatcgagagatgt |
215 |
Q |
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| T |
53043934 |
atcattaacactcctaacaaatgctcaacaataccgagaagtaaagaagagaaattacatctgtagatccacttgcgcttttcctttcatcgagagatgt |
53043835 |
T |
|
| Q |
216 |
gtttcgtcctatccaaacaaacacctctaacccacaatctaaaatatagcatttgttggtgtccagtaattcctttgtcaaagaatcggtttcaaaaggg |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043834 |
gtttcgtcctatccaaacaaacacctctaacccacaatctaaaatatagcatttgttggtgtccagtaattcctttgtcaaagaatcggtttcaaaaggc |
53043735 |
T |
|
| Q |
316 |
tctgccttccccttttccacactggaaaaatgataattttattataaatagagtattataaagtctaatgtttcgatataatttcctgagtgtagatgtc |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53043734 |
tctgccttccccttttccacactggaaaaatgataattttattataaatagagtattataaagtctaatgtttcgatataatttcctcagtgtagatgtc |
53043635 |
T |
|
| Q |
416 |
acaataattagaattatttccaagtcttctgaattatcaacttaagcaacttcaggctaaaatggtaagtttactacctttttatattggtaaacaacat |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043634 |
acaataattagaattatttccaagtcttctgaattatcaacttaagcaacttcaggctaaaatggtaagtttactacctttttatattggtaaacaacat |
53043535 |
T |
|
| Q |
516 |
aagtttacagaaaatggggaattaaaacaatgaaagaggagaactataaacacacttaaacattaatgagttgcatccaaatatcattgctaataagtaa |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53043534 |
aagtttacagaaaatggggaattaaaacaatgaaagaggagaactataaacacacttaaacattaatgagttgcatccaaatatcattgctaataagtaa |
53043435 |
T |
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| Q |
616 |
aggaatatattgacagtgtaaatgaatatatcaactgaaaaactaaaagaacatattaccaaagcaactttggaggatgagaatcaattgtctt |
709 |
Q |
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| T |
53043434 |
aggaatatattgacagtgtaaatgaatatatcaactgaaaaactaaaagaacatattaccaaagcaactttggaggatgagaatcaattgtctt |
53043341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 183 - 373
Target Start/End: Original strand, 15963334 - 15963524
Alignment:
| Q |
183 |
tccacttgcgcttttcctttcatcgagagatgtgtttcgtcctatccaaacaaacacctctaacccacaatctaaaatatagcatttgttggtgtccagt |
282 |
Q |
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||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || | || ||||||||||| | |||||| ||||| || ||||| || |
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| T |
15963334 |
tccacttgcactttttctttcatcaagggaggtgtttcttcccatccagacgaatatttccaacccacaatccagaatataacatttatttgtgtctaga |
15963433 |
T |
|
| Q |
283 |
aattcctttgtcaaagaatcggtttcaaaagggtctgccttccccttttccacactggaaaaatgataattttattataaatagagtatta |
373 |
Q |
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|| ||| || |||||||||||| |||| ||| ||||||| |||||||| |||||| |||| |||||||| || |||| ||||| |||| |
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| T |
15963434 |
aactcccttttcaaagaatcggcctcaacaggttctgcctgtcccttttcaacactgtaaaatcgataatttcatgataactagagcatta |
15963524 |
T |
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