View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7396_high_3 (Length: 688)
Name: NF7396_high_3
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7396_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 615; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 17 - 682
Target Start/End: Original strand, 48877033 - 48877692
Alignment:
| Q |
17 |
cagtgcctgctccatgccgagttctgtcagtaaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtttg |
116 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48877033 |
cagtgcctgctccatgacgagttctgtcagtaaacccttcttaatttgttactttgcaactatcttcactacaacctgtatgaccaagcagagaagtttg |
48877132 |
T |
|
| Q |
117 |
gctacactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagt |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877133 |
gctccactatttgaagcttattcaaaccagttcagtccttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagt |
48877232 |
T |
|
| Q |
217 |
ttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877233 |
ttatcctgcaggctgctcgtaaaactctagtgcaactcagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaata |
48877332 |
T |
|
| Q |
317 |
ccggaactggaactgtctttatgcaatacgaaatggagacagtgttgaggccttactttgaacttacaaatgctgtccggattagagacttggagctgtt |
416 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877333 |
ccggaactggaattgtctttatgcaatacgaaatggagacagtgttgaggccttactttgaacttacaaatgctgtccggattagagacttggagctgtt |
48877432 |
T |
|
| Q |
417 |
taggaatattgcagataagtttttggtagtaattaagtttcatagttagagaattgacacttaaggattagccatatatgtagcctccctagttagctta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48877433 |
taggaatattgcagataagtttttggtagtaattaagtttcatagttagagaatagacacttgaggattagccatatatgtagcctccctagttagctt- |
48877531 |
T |
|
| Q |
517 |
tgggaatgggacactacattagcttatctcctagaaaactctgctgacgagtttggacatacaatctattacaatgaaaccaaactaaggtttattaaaa |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877532 |
-----atgggacactacattagcttatctcctagaaaactctgctgacgagtttggacatacaatctattacaatgaaaccaaactaaggtttattaaaa |
48877626 |
T |
|
| Q |
617 |
gaatcgaccactaattttgcatctaattcaaaaataacattattcaaacccaactttgatgtccat |
682 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48877627 |
gaatcgaccactaattttgcatctaattcaaaaataacattattcaaacccaactttgaagtccat |
48877692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 160 - 281
Target Start/End: Complemental strand, 8380756 - 8380634
Alignment:
| Q |
160 |
tcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaactcaggg |
258 |
Q |
| |
|
||||||||||| | ||||||||||| ||||| |||||||||| |||||| ||||| | |||||||||||||||||||| | | || |||| | ||||| |
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|
| T |
8380756 |
tcttctacctcgggaaaattcggaccattcagttggagtataccgatgcaaaagagtctctcctgcaggctgctcgtaaagcaccagttgcagcacaggg |
8380657 |
T |
|
| Q |
259 |
ttttcgaattcaatgtaacaagt |
281 |
Q |
| |
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||||| ||||| |||||||||| |
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|
| T |
8380656 |
gtttcggattcagtgtaacaagt |
8380634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 8381008 - 8380942
Alignment:
| Q |
48 |
aaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtt |
114 |
Q |
| |
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|||| |||||||||||||||||| | ||||| || ||||||||||| |||| || ||||||||||| |
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| T |
8381008 |
aaacacttcttaatttgttacttcgtaactacctccactacaacctatatgatcaggcagagaagtt |
8380942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 155 - 388
Target Start/End: Complemental strand, 53456132 - 53455900
Alignment:
| Q |
155 |
ttatttcttctacctcagaaaaattcggacaattcaagtggagtatactgatgcattagagtttatcctgcaggctgctcgtaaaactctag-tgcaact |
253 |
Q |
| |
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|||| ||||||||||| | ||||| ||||| |||||| |||||||||| |||||| ||||| | ||||||| |||||||||||| ||| || |||| || |
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|
| T |
53456132 |
ttatctcttctacctcgggaaaatccggactattcaattggagtatacagatgcaaaagagtctctcctgcaagctgctcgtaaagctccagttgcagct |
53456033 |
T |
|
| Q |
254 |
cagggttttcgaattcaatgtaacaagtagactatcatagtgtgtttgcggttggcagaaataccggaactggaactgtctttatgcaatacgaaatgga |
353 |
Q |
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| |||||||||||||||||||||||||| | ||||||||||| |||| | ||||| ||| ||||| || | |||| ||||||||||| | | |||||| |
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| T |
53456032 |
cggggttttcgaattcaatgtaacaagtgggctatcatagtgcgtttactgttgggagagatacctgagc--gaaccgtctttatgcagaaaggaatgga |
53455935 |
T |
|
| Q |
354 |
gacagtgttgaggccttactttgaacttacaaatg |
388 |
Q |
| |
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|| || | | || ||||||||||| |||||||||| |
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| T |
53455934 |
gaaagcgctaagaccttactttgagcttacaaatg |
53455900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 114
Target Start/End: Complemental strand, 53456480 - 53456409
Alignment:
| Q |
43 |
tcagtaaacccttcttaatttgttactttgcaactatcttcactacaacctgcatgaccaagcagagaagtt |
114 |
Q |
| |
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|||| ||||||||||||||||| | ||| |||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
53456480 |
tcaggaaacccttcttaatttgctgcttcgcaactatcttcactacaacctatatgaccaggcagagaagtt |
53456409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 388 - 438
Target Start/End: Complemental strand, 53454423 - 53454373
Alignment:
| Q |
388 |
gctgtccggattagagacttggagctgtttaggaatattgcagataagttt |
438 |
Q |
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|||||||| ||| |||| ||||||||||||||||| ||||||||||||||| |
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| T |
53454423 |
gctgtccgtattggagatttggagctgtttaggaacattgcagataagttt |
53454373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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