View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7396_high_5 (Length: 577)
Name: NF7396_high_5
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7396_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 111 - 559
Target Start/End: Original strand, 40208081 - 40208529
Alignment:
| Q |
111 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208081 |
caagtcacgttatgtgggatagttcagtatctaaaccttgtaggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
40208180 |
T |
|
| Q |
211 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaacagggcaattgaaaggtc |
310 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208181 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattaactttggttaattctgtatgaaacagggcaattgaaaggtc |
40208280 |
T |
|
| Q |
311 |
aaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaatt |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208281 |
aaattgtttccatagaagtggtggaaaagatccatgtcacatgaaaagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaatt |
40208380 |
T |
|
| Q |
411 |
ccagattttgatcaattgtggtggctctccagtttagccgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttatag |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208381 |
ccagattttgatcaattgtggtggctctccagtttagctgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttatag |
40208480 |
T |
|
| Q |
511 |
gaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaa |
559 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40208481 |
gaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaa |
40208529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 111 - 559
Target Start/End: Original strand, 40200447 - 40200895
Alignment:
| Q |
111 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40200447 |
caagtcacgttatgtgggatagttcagtatctcaatcttgcgggggctgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
40200546 |
T |
|
| Q |
211 |
gatcttaatcatttagttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaacagggcaattgaaaggtc |
310 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||||||||| |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40200547 |
gatcttaatcatatagttaatttcatccaagaaaatatccaaggaatattgtagaattgactttggttaattttgtatgaaacagggcaattgaaaggtc |
40200646 |
T |
|
| Q |
311 |
aaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctcaaatt |
410 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
40200647 |
aaattgtttccatagaagtgggggaaaagatccatgtcacatgaacagcaatatttacatgatttcatttggtgcagtacaaattatattctctcaaatt |
40200746 |
T |
|
| Q |
411 |
ccagattttgatcaattgtggtggctctccagtttagccgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttatag |
510 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40200747 |
ccagattttgatcaattatggtggctctccagtttagctgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagttatag |
40200846 |
T |
|
| Q |
511 |
gaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaa |
559 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40200847 |
gaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaa |
40200895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 111 - 511
Target Start/End: Original strand, 40203947 - 40204348
Alignment:
| Q |
111 |
caagtcacgttatgtgggatagttcagtatctaaaccttgttggagttgccattggatacactatagcttctgccataagcatgatgtaagtttaattga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |
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| T |
40203947 |
caagtcacgttatgtgggatagttcagtatctcaaccttgttggagttgccattggatacactatagcctcagccataagcatgatgtaagttt----ga |
40204042 |
T |
|
| Q |
211 |
gatcttaatcattt-----agttaatttcattgaagaaaatatccaaagaatatggtataattgactttggttaattctgtatgaaacagggcaattgaa |
305 |
Q |
| |
|
||||||| |||| | ||||||||| ||| |||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| |
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| T |
40204043 |
gatcttattcatattttaaagttaattttattcaagaaaatatccaaggaatatggtagaattgactttggttaattttgtatgaaacagggcaattgaa |
40204142 |
T |
|
| Q |
306 |
aggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctc |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40204143 |
aggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaattatattctctc |
40204242 |
T |
|
| Q |
406 |
aaattccagattttgatcaattgtggtggctctccagtttagccgctgttatgtcctttacatactccacaattggtcttggccttggtattggaaaagt |
505 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |
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| T |
40204243 |
aaattccagattttgatcaaatatggtggctctccagtttagctactgttatgtcctttatatactccacaattggccttggccttggtattgggaaagt |
40204342 |
T |
|
| Q |
506 |
tatagg |
511 |
Q |
| |
|
|||||| |
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| T |
40204343 |
tatagg |
40204348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 40207975 - 40208017
Alignment:
| Q |
5 |
ggtagattattctctgtgaatatatataaagaaaagcaaattc |
47 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||||||||||| |
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|
| T |
40207975 |
ggtaaattcttctctgtgaatatatataaagaaaagcaaattc |
40208017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Complemental strand, 44315716 - 44315679
Alignment:
| Q |
402 |
tctcaaattccagattttgatcaattgtggtggctctc |
439 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
44315716 |
tctcaaattccagattttgataaaatgtggtggctctc |
44315679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 507 - 559
Target Start/End: Original strand, 40204431 - 40204483
Alignment:
| Q |
507 |
ataggaaataaaaagattgatggaaccatggctggggtaactgatgtgacaaa |
559 |
Q |
| |
|
|||| |||||||||||||||||||||| | | |||||||||||||| ||||| |
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|
| T |
40204431 |
atagaaaataaaaagattgatggaaccgtaaccggggtaactgatgtaacaaa |
40204483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 294 - 511
Target Start/End: Complemental strand, 10299443 - 10299226
Alignment:
| Q |
294 |
agggcaattgaaaggtcaaattgtttccatagaagtggtggaaaagatccatgtcacatgaatagcaatatttacatgatttcatttggtgcagtgcaaa |
393 |
Q |
| |
|
||||||||| ||||||| ||||||||||| || |||||||||||| ||||||| ||||||||| | || ||||||||||||||||||||| ||| | | |
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|
| T |
10299443 |
agggcaattaaaaggtctaattgtttccacagcagtggtggaaaaaatccatgccacatgaatggaaacatttacatgatttcatttggtattgtggaga |
10299344 |
T |
|
| Q |
394 |
ttatattctctcaaattccagattttgatcaattgtggtggctctccagtttagccgctgttatgtcctttacatactccacaattggtcttggccttgg |
493 |
Q |
| |
|
| | |||||||||||||| || |||||||| || ||||||||||| | |||| |||||||||||||| |||||||| || ||||| || || ||||| |
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|
| T |
10299343 |
tctttttctctcaaattcctgactttgatcagttatggtggctctctgctctagctgctgttatgtccttcacatactcaactattggcctcggtcttgg |
10299244 |
T |
|
| Q |
494 |
tattggaaaagttatagg |
511 |
Q |
| |
|
||| || ||||||||||| |
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|
| T |
10299243 |
tatcggtaaagttatagg |
10299226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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