View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7396_high_8 (Length: 467)
Name: NF7396_high_8
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7396_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 19990378 - 19990826
Alignment:
| Q |
1 |
gtccatggaaacatcgaccttgtgagggaaacgccaaggaaagtggaaatgatgatggtgaaagctgtcgctatgctctcagaaacagagtctcttcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19990378 |
gtccatggaaacatcgaccttgtgagggaaacgctaaggaaagtggaaatgatgatggtgaaagctgtcgctatgctctcagaaacagagtctcttcttc |
19990477 |
T |
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| Q |
101 |
caacaatgcaactgtagcgcagcataatcttcagtttcactctgatatggctgcaggagctaaacaaacacttatagaaagaaaagaaagtgatgatgat |
200 |
Q |
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| T |
19990478 |
caacaatgcaactgtagcgcagcataatcttcagtttcactctgatatggctgcaggagctaaacaaacacttatagaaagaaaagaaagtgatgatgat |
19990577 |
T |
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| Q |
201 |
gtattagttttcttaaaagagaaatacatgaagaatcaagaggaactcacacgtctggcaagagaacaggagcatctggaaagacaacaggaagaggtct |
300 |
Q |
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| T |
19990578 |
gtattagttttcttaaaagagaaatacttgaagaatcaagaggaactcacacgtctggcaagagaacaggagcatctggaaagacaacaggaagaggtct |
19990677 |
T |
|
| Q |
301 |
tacagttaataaattcaagggagaagagggaagaagtgtcaagcagcacctcactagtgttctaaggaatcaacaattatcatcatcatattttaaaaca |
400 |
Q |
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| T |
19990678 |
tacagttaataaattcaagggagaagagggaagaagtgtcaagcagctcctcactagtgttctaaggaatcaacaattatcatcatcatattttaaaaca |
19990777 |
T |
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| Q |
401 |
ctatttggtttcaaaactctcgttatgaaacttgtgatagtgagtcttt |
449 |
Q |
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| T |
19990778 |
ctatttggtttcaaaactctctttatgaaacttgtgatagtgagtcttt |
19990826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 20014967 - 20014878
Alignment:
| Q |
179 |
aagaaaagaaagtgatgatgatgtattagttttcttaaaagagaaatacatgaagaatcaagaggaactcacacgtctggcaagagaaca |
268 |
Q |
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| T |
20014967 |
aagaaaagaaagtgatcatgaagctttggttttcttaaaagagcaatacttgaagaatcaagaggaactcaggcttctggcaagacaaca |
20014878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 20007010 - 20006949
Alignment:
| Q |
207 |
gttttcttaaaagagaaatacatgaagaatcaagaggaactcacacgtctggcaagagaaca |
268 |
Q |
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| T |
20007010 |
gttttgttaaaagagcaatacttgaagaatcaagaggaactcacgcatctggcaagacaaca |
20006949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 17115431 - 17115485
Alignment:
| Q |
214 |
taaaagagaaatacatgaagaatcaagaggaactcacacgtctggcaagagaaca |
268 |
Q |
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| T |
17115431 |
taaaagagcaatacttgaagaatcaagacgaactcaggcgtctggcaagacaaca |
17115485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 26648453 - 26648538
Alignment:
| Q |
183 |
aaagaaagtgatgatgatgtattagttttcttaaaagagaaatacatgaagaatcaagaggaactcacacgtctggcaagagaaca |
268 |
Q |
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| T |
26648453 |
aaagaaagtgatcatgaagttgtggttttgttaaaagagctatacttgaagaaccaagaggaactcaggcgcctggcaagacaaca |
26648538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 271
Target Start/End: Original strand, 1718510 - 1718574
Alignment:
| Q |
207 |
gttttcttaaaagagaaatacatgaagaatcaagaggaactcacacgtctggcaagagaacagga |
271 |
Q |
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| T |
1718510 |
gttttgttaaaagaggaatgcatgaagaatcaagaggagctcgcacgtctggcaagacaacagga |
1718574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 271
Target Start/End: Complemental strand, 26353696 - 26353604
Alignment:
| Q |
179 |
aagaaaagaaagtgatgatgatgtattagttttcttaaaagagaaatacatgaagaatcaagaggaactcacacgtctggcaagagaacagga |
271 |
Q |
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| T |
26353696 |
aagaaaagaaagtgatcatgaacttgtggtttggttaaaagagcaatacttgaaggatcaagaggaactcaggcgtctggcaagacaacagga |
26353604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 376
Target Start/End: Complemental strand, 26353621 - 26353519
Alignment:
| Q |
275 |
tctggaaagacaacaggaagaggtcttacagttaataaattcaagggagaagagggaagaagtg-tcaagcagcacctcactagtgttctaaggaatcaa |
373 |
Q |
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||||| |||||||||||||||| | |||| |||||| |||| | |||||||||||| |||| | | | ||| | ||||||||||||||| | ||||||| |
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| T |
26353621 |
tctggcaagacaacaggaagagatgttacgattaatagattcgaaggagaagagggatgaagagttgaggcaactcctcactagtgttctgaagaatcaa |
26353522 |
T |
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| Q |
374 |
caa |
376 |
Q |
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||| |
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| T |
26353521 |
caa |
26353519 |
T |
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