View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7396_low_10 (Length: 428)

Name: NF7396_low_10
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7396_low_10
NF7396_low_10
[»] chr8 (10 HSPs)
chr8 (18-144)||(422494-422620)
chr8 (368-415)||(421664-421711)
chr8 (189-230)||(422069-422110)
chr8 (265-303)||(421773-421811)
chr8 (93-145)||(422257-422309)
chr8 (93-141)||(29099784-29099832)
chr8 (93-144)||(24532462-24532513)
chr8 (238-268)||(422000-422030)
chr8 (93-146)||(28213143-28213195)
chr8 (96-145)||(39984809-39984858)
[»] chr6 (6 HSPs)
chr6 (95-142)||(12199848-12199895)
chr6 (95-144)||(6400887-6400936)
chr6 (94-142)||(3680239-3680287)
chr6 (93-144)||(6542984-6543035)
chr6 (93-144)||(24554109-24554160)
chr6 (95-144)||(25065135-25065184)
[»] chr2 (9 HSPs)
chr2 (94-144)||(44404199-44404249)
chr2 (93-145)||(25082577-25082629)
chr2 (100-144)||(37840336-37840380)
chr2 (94-144)||(11020551-11020601)
chr2 (95-144)||(16419496-16419545)
chr2 (95-144)||(17525379-17525428)
chr2 (100-144)||(2029768-2029812)
chr2 (100-144)||(2030003-2030047)
chr2 (96-144)||(2324235-2324283)
[»] chr5 (6 HSPs)
chr5 (94-143)||(37782092-37782141)
chr5 (94-141)||(32908762-32908809)
chr5 (94-141)||(33337282-33337329)
chr5 (94-143)||(15480315-15480364)
chr5 (95-144)||(24528534-24528583)
chr5 (100-144)||(17352476-17352520)
[»] chr4 (6 HSPs)
chr4 (93-141)||(53699019-53699067)
chr4 (94-145)||(35645805-35645856)
chr4 (99-144)||(14783228-14783273)
chr4 (100-144)||(1518163-1518207)
chr4 (100-144)||(12869070-12869114)
chr4 (100-144)||(52559566-52559610)
[»] chr3 (2 HSPs)
chr3 (93-145)||(13740903-13740955)
chr3 (95-144)||(39269325-39269374)
[»] chr1 (10 HSPs)
chr1 (94-145)||(25713386-25713437)
chr1 (94-141)||(27413575-27413622)
chr1 (93-139)||(17468336-17468382)
chr1 (99-144)||(26173265-26173310)
chr1 (101-146)||(38668125-38668170)
chr1 (96-144)||(3169761-3169809)
chr1 (94-138)||(38733375-38733419)
chr1 (96-144)||(51588987-51589035)
chr1 (96-144)||(51589221-51589269)
chr1 (96-144)||(51589801-51589849)
[»] scaffold0459 (1 HSPs)
scaffold0459 (94-144)||(13094-13144)
[»] scaffold0366 (2 HSPs)
scaffold0366 (94-144)||(10735-10785)
scaffold0366 (97-142)||(14404-14449)
[»] scaffold0129 (1 HSPs)
scaffold0129 (94-144)||(14296-14346)
[»] chr7 (5 HSPs)
chr7 (94-144)||(21054994-21055044)
chr7 (94-144)||(48243102-48243152)
chr7 (93-141)||(4454768-4454816)
chr7 (93-141)||(23796228-23796276)
chr7 (94-142)||(42985166-42985214)
[»] scaffold0005 (1 HSPs)
scaffold0005 (99-144)||(56457-56502)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 422620 - 422494
Alignment:
Q  18 agcgtggacataatttaaaaaagttaattaaaagctaattgtgcaaacaaaatgtaattaacatacaagattaacagatggtctgacaatatgtttataa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  422620 agcgtggacataatttaaaaaagttaattaaaagctaattgtgcaaacaaaatgtaattaacatacaagattaacatatggtctgacaatatgtttataa 422521  T
Q  118 gtgtaggcaatcatcagctcacaagcc 144  Q
    ||||| ||||||||||||||| |||||    
T  422520 gtgtatgcaatcatcagctcataagcc 422494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 368 - 415
Target Start/End: Complemental strand, 421711 - 421664
Alignment:
Q  368 ttacacttaggtgaaaaggtaatttccattggaagcatatcctgagta 415  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  421711 ttacacttaggtgaaaaggtaatttccattggaagcatatccagagta 421664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 422110 - 422069
Alignment:
Q  189 gatggattgagtctttgaactactttaagttgagggttgagg 230  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  422110 gatggattgagtctttgaactactttaagttgagggttgagg 422069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 421811 - 421773
Alignment:
Q  265 gaactctaacccttaacatactagtgtttgttatttgtc 303  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  421811 gaaccctaacccttaacatactagtgtttgttatttgtc 421773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 422309 - 422257
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcca 145  Q
    ||||||||||||||| |||||| ||||| |||||||| ||| |||||||||||    
T  422309 agatggtctgacaatgtgtttaaaagtggaggcaatcctcacctcacaagcca 422257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 29099832 - 29099784
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaa 141  Q
    ||||||||||||||| |||||||||||| |||||||| ||| |||||||    
T  29099832 agatggtctgacaatgtgtttataagtggaggcaatcttcacctcacaa 29099784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 24532513 - 24532462
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||| |||||||| ||||||||||||  ||||||||||| ||||||||||    
T  24532513 agatggcctgacaatgtgtttataagtgggggcaatcatcacctcacaagcc 24532462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 422030 - 422000
Alignment:
Q  238 aagttaaaagttaattaacactcaatcgaac 268  Q
    |||||||||||||||||||||||||||||||    
T  422030 aagttaaaagttaattaacactcaatcgaac 422000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 28213195 - 28213143
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagccaa 146  Q
    ||||||||||||||| ||||||||||||  ||||||| ||| ||||||||||||    
T  28213195 agatggtctgacaatgtgtttataagtg-cggcaatcctcacctcacaagccaa 28213143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 39984809 - 39984858
Alignment:
Q  96 tggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcca 145  Q
    |||||||||||| ||||||||||||  ||||||| ||| |||||||||||    
T  39984809 tggtctgacaatttgtttataagtgggggcaatcctcacctcacaagcca 39984858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 12199895 - 12199848
Alignment:
Q  95 atggtctgacaatatgtttataagtgtaggcaatcatcagctcacaag 142  Q
    ||||||||||||||||||||||||||  ||||||||||| ||||||||    
T  12199895 atggtctgacaatatgtttataagtgggggcaatcatcacctcacaag 12199848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 6400936 - 6400887
Alignment:
Q  95 atggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||| ||||||||||||||||||||| |||||||| ||| ||||||||||    
T  6400936 atggcctgacaatatgtttataagtggaggcaatcctcacctcacaagcc 6400887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 3680239 - 3680287
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaag 142  Q
    |||||||||||||| ||||||||||||  ||||||||||| ||||||||    
T  3680239 gatggtctgacaatgtgtttataagtgggggcaatcatcacctcacaag 3680287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Complemental strand, 6543035 - 6542984
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||||||||| ||||||||||||  ||||||||||| |||| |||||    
T  6543035 agatggtctgacaatgtgtttataagtgggggcaatcatcacctcagaagcc 6542984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 144
Target Start/End: Original strand, 24554109 - 24554160
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||||||||||| ||||||||||  ||||||| ||| ||||||||||    
T  24554109 agatggtctgacaatatatttataagtgggggcaatcttcacctcacaagcc 24554160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 25065184 - 25065135
Alignment:
Q  95 atggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||||||||||||||||   ||||||| ||| ||||||||||    
T  25065184 atggtctgacaatatgtttataagtaggggcaatcctcacctcacaagcc 25065135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 44404249 - 44404199
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||||||||||| ||||||  ||||||||||| ||||||||||    
T  44404249 gatggtctgacaatatgtttgtaagtgggggcaatcatcacctcacaagcc 44404199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 25082629 - 25082577
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcca 145  Q
    ||||||||||||||| |||||||||||   ||||||||||| |||||||||||    
T  25082629 agatggtctgacaatgtgtttataagtaggggcaatcatcacctcacaagcca 25082577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 37840336 - 37840380
Alignment:
Q  100 ctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| |||||||||||| |||||||||||| ||||||||||    
T  37840336 ctgacaatgtgtttataagtggaggcaatcatcacctcacaagcc 37840380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 11020551 - 11020601
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||| ||| |||||||||||| |||||||| ||| ||||||||||    
T  11020551 gatggtctgaaaatgtgtttataagtggaggcaatcctcacctcacaagcc 11020601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 16419496 - 16419545
Alignment:
Q  95 atggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  16419496 atggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagcc 16419545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 17525428 - 17525379
Alignment:
Q  95 atggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  17525428 atggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagcc 17525379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 2029768 - 2029812
Alignment:
Q  100 ctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| |||||||||||| |||||||| ||| ||||||||||    
T  2029768 ctgacaatgtgtttataagtggaggcaatcctcacctcacaagcc 2029812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 2030003 - 2030047
Alignment:
Q  100 ctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| |||||||||||| |||||||| ||| ||||||||||    
T  2030003 ctgacaatgtgtttataagtggaggcaatcctcacctcacaagcc 2030047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 2324235 - 2324283
Alignment:
Q  96 tggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  2324235 tggtctgacaatttgtttataagtgggggcaatcctcacctcacaagcc 2324283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 37782141 - 37782092
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagc 143  Q
    |||||||||||||| ||||||||||||  ||||||||||| |||||||||    
T  37782141 gatggtctgacaatgtgtttataagtgggggcaatcatcacctcacaagc 37782092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 32908809 - 32908762
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaa 141  Q
    |||| ||||||||| |||||||||||| |||||||||||| |||||||    
T  32908809 gatgatctgacaatgtgtttataagtggaggcaatcatcacctcacaa 32908762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 33337329 - 33337282
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaa 141  Q
    ||||| |||||||||||||||||||||  ||||||||||| |||||||    
T  33337329 gatggcctgacaatatgtttataagtgggggcaatcatcacctcacaa 33337282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 15480315 - 15480364
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagc 143  Q
    |||||||||||||| ||||||||||||  ||||||| ||| |||||||||    
T  15480315 gatggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagc 15480364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 24528534 - 24528583
Alignment:
Q  95 atggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  24528534 atggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagcc 24528583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 17352520 - 17352476
Alignment:
Q  100 ctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| ||||||||||||  ||||||||||| ||||||||||    
T  17352520 ctgacaatgtgtttataagtgggggcaatcatcacctcacaagcc 17352476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 53699019 - 53699067
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaa 141  Q
    ||||| ||||||||||||||||||||||| ||||||| ||| |||||||    
T  53699019 agatgatctgacaatatgtttataagtgtgggcaatcctcacctcacaa 53699067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 35645856 - 35645805
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcca 145  Q
    |||||||||||||| ||||||||||||  ||||||| ||| |||||||||||    
T  35645856 gatggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagcca 35645805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 14783273 - 14783228
Alignment:
Q  99 tctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||| ||||||||| ||| ||||||||||| ||||||||||    
T  14783273 tctgacaatttgtttataactgtgggcaatcatcacctcacaagcc 14783228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 1518163 - 1518207
Alignment:
Q  100 ctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| ||||||||||||  ||||||| ||||||||||||||    
T  1518163 ctgacaatttgtttataagtgggggcaatcctcagctcacaagcc 1518207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 12869114 - 12869070
Alignment:
Q  100 ctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| ||||||||||||  ||||||||||| ||||||||||    
T  12869114 ctgacaatttgtttataagtgggggcaatcatcacctcacaagcc 12869070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 52559566 - 52559610
Alignment:
Q  100 ctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| ||||||||||||  ||||||||||| ||||||||||    
T  52559566 ctgacaatgtgtttataagtgggggcaatcatcacctcacaagcc 52559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 145
Target Start/End: Complemental strand, 13740955 - 13740903
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcca 145  Q
    |||||||||||||||||||||| |||||  || |||||||| |||||||||||    
T  13740955 agatggtctgacaatatgtttacaagtgggggaaatcatcacctcacaagcca 13740903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 39269325 - 39269374
Alignment:
Q  95 atggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  39269325 atggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagcc 39269374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 25713386 - 25713437
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcca 145  Q
    |||||||||||||| ||||||||||||  ||||||| ||| |||||||||||    
T  25713386 gatggtctgacaatgtgtttataagtgggggcaatcgtcacctcacaagcca 25713437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 141
Target Start/End: Original strand, 27413575 - 27413622
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaa 141  Q
    ||||| ||||||||||||||||||||| |||||||| ||| |||||||    
T  27413575 gatggcctgacaatatgtttataagtggaggcaatcctcacctcacaa 27413622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 17468336 - 17468382
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcac 139  Q
    ||||||||||||||||||||||||||||  ||||||| ||| |||||    
T  17468336 agatggtctgacaatatgtttataagtgggggcaatcctcatctcac 17468382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 26173310 - 26173265
Alignment:
Q  99 tctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||| ||||||||||||  ||||||||||| ||||||||||    
T  26173310 tctgacaatgtgtttataagtgggggcaatcatcacctcacaagcc 26173265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 38668125 - 38668170
Alignment:
Q  101 tgacaatatgtttataagtgtaggcaatcatcagctcacaagccaa 146  Q
    ||||||| ||||||||||||  ||||||||||| ||||||||||||    
T  38668125 tgacaatgtgtttataagtgggggcaatcatcatctcacaagccaa 38668170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 3169761 - 3169809
Alignment:
Q  96 tggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  3169761 tggtctgacaatttgtttataagtgggggcaatcttcacctcacaagcc 3169809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 138
Target Start/End: Original strand, 38733375 - 38733419
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctca 138  Q
    |||||||||||||||||||||||||||  ||||||| ||| ||||    
T  38733375 gatggtctgacaatatgtttataagtgagggcaatcctcacctca 38733419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 51588987 - 51589035
Alignment:
Q  96 tggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  51588987 tggtctgacaatttgtttataagtgagggcaatcctcacctcacaagcc 51589035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 51589221 - 51589269
Alignment:
Q  96 tggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  51589221 tggtctgacaatttgtttataagtgagggcaatcctcacctcacaagcc 51589269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Original strand, 51589801 - 51589849
Alignment:
Q  96 tggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  51589801 tggtctgacaatttgtttataagtgagggcaatcctcacctcacaagcc 51589849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0459 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 13094 - 13144
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| ||||||||||| ||||||  ||||||||||| ||||||||||    
T  13094 gatggtctaacaatatgtttgtaagtgggggcaatcatcacctcacaagcc 13144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 10735 - 10785
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||| ||||||||||| ||||||  ||||||||||| ||||||||||    
T  10735 gatggtctaacaatatgtttgtaagtgggggcaatcatcacctcacaagcc 10785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0366; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 14404 - 14449
Alignment:
Q  97 ggtctgacaatatgtttataagtgtaggcaatcatcagctcacaag 142  Q
    ||||||||||||||||| ||||||  ||||||||||| ||||||||    
T  14404 ggtctgacaatatgtttgtaagtgggggcaatcatcacctcacaag 14449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 14296 - 14346
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||||| ||||||||||||  | ||||||||| ||||||||||    
T  14296 gatggtctgacaatgtgtttataagtggggacaatcatcacctcacaagcc 14346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 21055044 - 21054994
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||| |||||||||||||||||||||  ||||||| ||| ||||||||||    
T  21055044 gatggcctgacaatatgtttataagtgggggcaatcctcacctcacaagcc 21054994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 48243152 - 48243102
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    |||||||||||||| ||||||||||||  ||||||| ||| ||||||||||    
T  48243152 gatggtctgacaatgtgtttataagtgggggcaatcctcacctcacaagcc 48243102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 4454768 - 4454816
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaa 141  Q
    ||||||||||||||| ||||||||||||  ||||||| ||| |||||||    
T  4454768 agatggtctgacaatgtgtttataagtgggggcaatcctcacctcacaa 4454816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Complemental strand, 23796276 - 23796228
Alignment:
Q  93 agatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaa 141  Q
    ||||||||| ||||| ||||||||||||  ||||||||||| |||||||    
T  23796276 agatggtctaacaatgtgtttataagtgggggcaatcatcacctcacaa 23796228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 42985214 - 42985166
Alignment:
Q  94 gatggtctgacaatatgtttataagtgtaggcaatcatcagctcacaag 142  Q
    |||||| ||||||| |||||||||||| |||||||| ||| ||||||||    
T  42985214 gatggtttgacaatgtgtttataagtggaggcaatcctcacctcacaag 42985166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 56457 - 56502
Alignment:
Q  99 tctgacaatatgtttataagtgtaggcaatcatcagctcacaagcc 144  Q
    ||||||||| ||||||||| ||| ||||||||||| ||||||||||    
T  56457 tctgacaatttgtttataactgtgggcaatcatcacctcacaagcc 56502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University