View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7396_low_11 (Length: 393)

Name: NF7396_low_11
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7396_low_11
NF7396_low_11
[»] chr6 (8 HSPs)
chr6 (278-380)||(26812096-26812198)
chr6 (278-380)||(26618208-26618310)
chr6 (278-380)||(26724136-26724238)
chr6 (91-208)||(28242307-28242426)
chr6 (91-168)||(25105429-25105506)
chr6 (132-200)||(27671388-27671458)
chr6 (297-375)||(27664733-27664811)
chr6 (132-169)||(27672348-27672385)
[»] chr1 (1 HSPs)
chr1 (286-376)||(26136463-26136553)
[»] scaffold0038 (1 HSPs)
scaffold0038 (91-208)||(42469-42588)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 278 - 380
Target Start/End: Complemental strand, 26812198 - 26812096
Alignment:
Q  278 aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca 377  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  26812198 aagtcccacaatagggtgatcagcaacttctaaaagaccacggttgatctttttggaaatctctgtaactatcttcttaataaactcatattcatatgca 26812099  T
Q  378 tct 380  Q
    |||    
T  26812098 tct 26812096  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 278 - 380
Target Start/End: Complemental strand, 26618310 - 26618208
Alignment:
Q  278 aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca 377  Q
    |||||| |||||  |||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||  ||||||||||| ||||||||||||    
T  26618310 aagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgtaactatcttcttaataaactcgtattcatattca 26618211  T
Q  378 tct 380  Q
    |||    
T  26618210 tct 26618208  T

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Target: chr6; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 278 - 380
Target Start/End: Complemental strand, 26724238 - 26724136
Alignment:
Q  278 aagtcccacaacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattca 377  Q
    |||||| |||||  |||||||||||||||||||||||||||  |||||||||||  ||||||||||||||||||  ||||||||||| ||||||||||||    
T  26724238 aagtccaacaactaggtgatcagcaacttctaaaagaccacaattgatcttgttccaaatctctgtaactatcttcttaataaactcgtattcatattca 26724139  T
Q  378 tct 380  Q
    |||    
T  26724138 tct 26724136  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 28242307 - 28242426
Alignment:
Q  91 aaaaatcaaactgaaattttcaggcgggatcttaaaaataaattgagcgtttaagtgatattttgtttggacctcaaaaat--ttccgatatttaatctc 188  Q
    |||| ||||| ||| ||||||||  |||| | ||||||| ||||||  | |||||| ||||||||||| |||||||||| |  || ||||||||||||||    
T  28242307 aaaagtcaaattgacattttcagatgggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctc 28242406  T
Q  189 atctaccaaactgatatttc 208  Q
    |||||||||||||| |||||    
T  28242407 atctaccaaactgacatttc 28242426  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 25105506 - 25105429
Alignment:
Q  91 aaaaatcaaactgaaattttcaggcgggatcttaaaaataaattgagcgtttaagtgatattttgtttggacctcaaa 168  Q
    |||||||||||||| |||  || | |||| | ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  25105506 aaaaatcaaactgacattcccaagtgggaccctaaaaatgaattgagagcttaagtgatattttgtttggacctcaaa 25105429  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 27671388 - 27671458
Alignment:
Q  132 attgagcgtttaagtgatattttgtttggacctcaaaa--atttccgatatttaatctcatctaccaaact 200  Q
    |||||| | ||||||||||||||||||||| |||||||   |||| ||||||||||| |||||||||||||    
T  27671388 attgagagcttaagtgatattttgtttggatctcaaaagtctttctgatatttaatcacatctaccaaact 27671458  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 375
Target Start/End: Original strand, 27664733 - 27664811
Alignment:
Q  297 tcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatatt 375  Q
    |||||||| | |||| ||| |||||||||||||||||| |  ||||||||||| |||| |||||| |  ||||||||||    
T  27664733 tcagcaacatgtaaatgacaacggttgatcttgttggagacgtctgtaactatttcttcaataaatttgtattcatatt 27664811  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 169
Target Start/End: Original strand, 27672348 - 27672385
Alignment:
Q  132 attgagcgtttaagtgatattttgtttggacctcaaaa 169  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  27672348 attgagagtttaagtgatattttgtatggacctcaaaa 27672385  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 286 - 376
Target Start/End: Complemental strand, 26136553 - 26136463
Alignment:
Q  286 caacagggtgatcagcaacttctaaaagaccacggttgatcttgttggaaatctctgtaactatctctttaataaactcatattcatattc 376  Q
    |||| |||||||| ||||| | ||||||| |||||||||||||||| |||||| ||||||||||||  ||||||||||||||||| |||||    
T  26136553 caacggggtgatcggcaacatgtaaaagaacacggttgatcttgtttgaaatcactgtaactatcttcttaataaactcatattcgtattc 26136463  T

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Target: scaffold0038 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 208
Target Start/End: Original strand, 42469 - 42588
Alignment:
Q  91 aaaaatcaaactgaaattttcaggcgggatcttaaaaataaattgagcgtttaagtgatattttgtttggacctcaaaaat--ttccgatatttaatctc 188  Q
    |||| ||||| ||| ||||||||  |||| | ||||||| ||||||  | |||||| ||||||||||| |||||||||| |  || ||||||||||||||    
T  42469 aaaagtcaaattgacattttcagatgggaccctaaaaatgaattgaaagcttaagtaatattttgtttagacctcaaaagtctttacgatatttaatctc 42568  T
Q  189 atctaccaaactgatatttc 208  Q
    |||||||||||||| |||||    
T  42569 atctaccaaactgacatttc 42588  T

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