View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7396_low_13 (Length: 322)
Name: NF7396_low_13
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7396_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 12801925 - 12801638
Alignment:
| Q |
16 |
atggaattcaatagtaattttttcaatccaaatcgtacagattctccgcgtcaccactgctctgcacaaaacttccgccattggtttttctcattgccgg |
115 |
Q |
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| T |
12801925 |
atggaattcaatagtaattttttcaatccaaatcgtacggattctccgcgtcaccactgctctgctccaaacttccgccattggcttttctcactgccgg |
12801826 |
T |
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| Q |
116 |
atttcggaggttttgttggttccgttttgtatttacaacccgtaagagggtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggtt |
215 |
Q |
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| T |
12801825 |
atttcggaggttttgttggttccgttttgtatttacaacccgtaagagagtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggtt |
12801726 |
T |
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| Q |
216 |
catgattggttatccgcaaatcttcttgttttaagttgttttgtgttggtctcaaaactcgtattgggtcggtctctttggtgctacc |
303 |
Q |
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| T |
12801725 |
catgattggttatccgcaaatcttcttgttttaagttgttttgtgtttgtctcaaaacttgtattgggtcggtctctttggtgctacc |
12801638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 239
Target Start/End: Complemental strand, 38112774 - 38112568
Alignment:
| Q |
32 |
attttttcaatccaaatcgtacagattctccgcgtcaccactgctctgcacaaaacttccgccattggtttttctcattgccggatttcggaggttttg- |
130 |
Q |
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| T |
38112774 |
attttgtcaatccaaatcgaacagattctccgcatcaccgttgctctacacaaaacctccgttgttggcttttctcgctaccggatttcagaagttttga |
38112675 |
T |
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| Q |
131 |
ttggttccgttttgtatttacaacccgtaagagggtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggttcatgattggttatcc |
230 |
Q |
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| T |
38112674 |
ttggttccgttttgtccgtacaacccgtaagagggtctgttctcaacagctccgcctccttt--ctgcggtggctgctcatggttcatgattggttgtcc |
38112577 |
T |
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| Q |
231 |
gcaaatctt |
239 |
Q |
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| T |
38112576 |
gcagatctt |
38112568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 233
Target Start/End: Original strand, 15819079 - 15819260
Alignment:
| Q |
38 |
tcaatccaaatcgtacagattctccgcgtcaccactgctctgcacaaaacttccgccattggtttttctcattgccggatttcggaggttttgttggttc |
137 |
Q |
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|||| ||||||||||||||||||| || ||||| | |||||||||||||||||||| |||| ||| ||| |||||||||||||| ||||||| | |
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| T |
15819079 |
tcaacccaaatcgtacagattctctgcatcaccgttactctgcacaaaacttccgccgttggctttcctcgctgccggatttcggaagttttgt-----c |
15819173 |
T |
|
| Q |
138 |
cgttttgtatttacaacccgtaagagggtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggttcatgattggttatccgca |
233 |
Q |
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| T |
15819174 |
cgt---------acaacccgtaagcgggtctgttctcaacagctccgcctcctttcacggcggcggctggtcatggttcatgaatggttgtccgca |
15819260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 40 - 236
Target Start/End: Original strand, 17360372 - 17360569
Alignment:
| Q |
40 |
aatccaaatcgtacagattctccgcgtcaccactgctctgcacaaaacttccgccattggtttttctcattgccggatttcggaggttttg-ttggttcc |
138 |
Q |
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||||||||||| ||||||||||| ||||| |||||| ||||||||||||||| |||| ||||||| ||||||||||| ||||||||| |||||||| |
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| T |
17360372 |
aatccaaatcgattagattctccgcatcaccgttgctctacacaaaacttccgccgttggcttttctcgctgccggatttcagaggttttgcttggttcc |
17360471 |
T |
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| Q |
139 |
gttttgtatttacaacccgtaagagggtctgttctcaatagcttcgcctcctttcacggtggcggctgctcgtggttcatgattggttatccgcaaat |
236 |
Q |
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| T |
17360472 |
gttttgttcgtacaacccgtaagagggtctgttctcaacagctccgcatactttcacagcggtggctgctcaagattcatcattggttgtctgcaaat |
17360569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Complemental strand, 18978751 - 18978710
Alignment:
| Q |
257 |
tgtgttggtctcaaaactcgtattgggtcggtctctttggtg |
298 |
Q |
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| T |
18978751 |
tgtgttggtctcaaaactcgtacagggtcggtttctttggtg |
18978710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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