View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7396_low_14 (Length: 309)

Name: NF7396_low_14
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7396_low_14
NF7396_low_14
[»] chr8 (11 HSPs)
chr8 (7-154)||(3385682-3385833)
chr8 (240-283)||(11335646-11335689)
chr8 (240-283)||(10117049-10117092)
chr8 (240-286)||(40640354-40640400)
chr8 (250-283)||(9015895-9015928)
chr8 (254-283)||(20524198-20524227)
chr8 (240-281)||(34326263-34326304)
chr8 (250-283)||(45045456-45045489)
chr8 (243-283)||(2805892-2805932)
chr8 (240-284)||(33385249-33385293)
chr8 (240-284)||(44521326-44521370)
[»] chr5 (15 HSPs)
chr5 (17-138)||(41804843-41804964)
chr5 (240-283)||(33075083-33075126)
chr5 (240-286)||(14772622-14772668)
chr5 (240-283)||(71277-71320)
chr5 (240-283)||(5984062-5984105)
chr5 (253-284)||(15549403-15549434)
chr5 (240-283)||(35032349-35032392)
chr5 (241-280)||(41814402-41814441)
chr5 (240-274)||(26045283-26045317)
chr5 (248-286)||(37554423-37554461)
chr5 (248-286)||(37685046-37685084)
chr5 (243-284)||(31691337-31691378)
chr5 (253-281)||(14642097-14642125)
chr5 (240-280)||(19868940-19868980)
chr5 (254-286)||(30778032-30778064)
[»] chr2 (9 HSPs)
chr2 (240-284)||(4563875-4563919)
chr2 (240-283)||(15859630-15859673)
chr2 (251-281)||(31211242-31211272)
chr2 (240-286)||(32143482-32143528)
chr2 (248-281)||(604883-604916)
chr2 (248-281)||(26269374-26269407)
chr2 (248-281)||(31175107-31175140)
chr2 (251-284)||(32218654-32218687)
chr2 (243-283)||(23377963-23378003)
[»] scaffold0631 (1 HSPs)
scaffold0631 (240-283)||(4365-4408)
[»] chr1 (7 HSPs)
chr1 (240-283)||(48083583-48083626)
chr1 (240-283)||(34953975-34954018)
chr1 (240-281)||(42761471-42761512)
chr1 (240-284)||(13048675-13048719)
chr1 (240-284)||(13053672-13053716)
chr1 (240-286)||(6758564-6758610)
chr1 (251-284)||(13043418-13043451)
[»] scaffold0149 (1 HSPs)
scaffold0149 (240-283)||(24624-24667)
[»] chr7 (13 HSPs)
chr7 (240-283)||(22752578-22752621)
chr7 (240-280)||(21886485-21886525)
chr7 (243-286)||(30138864-30138907)
chr7 (251-286)||(33935027-33935062)
chr7 (242-277)||(37489535-37489570)
chr7 (242-281)||(44416613-44416652)
chr7 (241-283)||(4089868-4089910)
chr7 (242-284)||(9930408-9930450)
chr7 (240-281)||(2943293-2943334)
chr7 (242-283)||(31813431-31813472)
chr7 (258-286)||(2534016-2534044)
chr7 (251-283)||(21586893-21586925)
chr7 (254-286)||(24617829-24617861)
[»] chr6 (3 HSPs)
chr6 (240-283)||(18886387-18886430)
chr6 (251-286)||(33689258-33689293)
chr6 (243-283)||(11746307-11746347)
[»] chr4 (18 HSPs)
chr4 (240-283)||(3511727-3511770)
chr4 (241-283)||(38298109-38298151)
chr4 (240-273)||(10308253-10308286)
chr4 (243-283)||(18423913-18423953)
chr4 (242-286)||(35151737-35151781)
chr4 (240-283)||(21142169-21142212)
chr4 (240-283)||(35425270-35425313)
chr4 (240-283)||(40952427-40952470)
chr4 (240-281)||(4406322-4406363)
chr4 (248-281)||(24331451-24331484)
chr4 (253-286)||(36786181-36786214)
chr4 (240-281)||(54508187-54508228)
chr4 (243-283)||(4484095-4484135)
chr4 (243-283)||(4708615-4708655)
chr4 (243-283)||(16170931-16170971)
chr4 (253-281)||(38938072-38938100)
chr4 (250-286)||(46803436-46803472)
chr4 (243-283)||(55416321-55416361)
[»] chr3 (12 HSPs)
chr3 (240-283)||(10872751-10872794)
chr3 (240-283)||(22497030-22497073)
chr3 (240-283)||(24722766-24722809)
chr3 (240-286)||(3648775-3648821)
chr3 (242-283)||(35987510-35987551)
chr3 (243-283)||(50466834-50466874)
chr3 (240-283)||(29389345-29389388)
chr3 (240-283)||(47334660-47334703)
chr3 (240-283)||(51060681-51060724)
chr3 (253-283)||(26243710-26243740)
chr3 (240-284)||(7601932-7601976)
chr3 (240-280)||(45736769-45736809)


Alignment Details
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 3385833 - 3385682
Alignment:
Q  7 tcgaagaatattggttttgaagttgtaaatttgggaccaaaagaatttgcttgaggggctgaagatccaaaatctcaatggagtcattcaatgtacttaa 106  Q
    |||||| |||||||||||||||||| |||||| ||||||| |||||||| |||| || ||||||||||||||||||||||||||| |||||| |||||||    
T  3385833 tcgaaggatattggttttgaagttgcaaatttaggaccaatagaatttgtttgaaggactgaagatccaaaatctcaatggagtcgttcaatttacttaa 3385734  T
Q  107 taaaacatcccttacttatat----ttataaccataataacacgacatcatt 154  Q
    ||||| |||||||||||||||    ||||||||||||||||| |||||||||    
T  3385733 taaaatatcccttacttatatttatttataaccataataacatgacatcatt 3385682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 11335689 - 11335646
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||||||||  |||||||||||||||||||||||||||||||    
T  11335689 agcaaaactttgcattttagattcattcaattaataatgtatat 11335646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 10117092 - 10117049
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| |||| |||||||||||||||||||||| ||||||||    
T  10117092 agcaaaaatttacattttagattcattcaattaatgatgtatat 10117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 40640400 - 40640354
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatatagt 286  Q
    |||||||||||  |||||||||||||||||||||| ||||| |||||    
T  40640400 agcaaaactttgcattttagattcattcaattaatgatgtacatagt 40640354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 9015928 - 9015895
Alignment:
Q  250 tatattttagattcattcaattaataatgtatat 283  Q
    ||||||||||||||||||||||||| ||||||||    
T  9015928 tatattttagattcattcaattaatgatgtatat 9015895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 283
Target Start/End: Original strand, 20524198 - 20524227
Alignment:
Q  254 ttttagattcattcaattaataatgtatat 283  Q
    ||||||||||||||||||||||||||||||    
T  20524198 ttttagattcattcaattaataatgtatat 20524227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 34326263 - 34326304
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtat 281  Q
    |||||||||||  |||||||||||||||||||||| ||||||    
T  34326263 agcaaaactttgcattttagattcattcaattaatgatgtat 34326304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 45045489 - 45045456
Alignment:
Q  250 tatattttagattcattcaattaataatgtatat 283  Q
    ||||||||||||||||||||||||| ||||||||    
T  45045489 tatattttagattcattcaattaatgatgtatat 45045456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 2805932 - 2805892
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||| |||| |||||| ||||||||||||||||||||||||    
T  2805932 aaaattttacattttaaattcattcaattaataatgtatat 2805892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 33385293 - 33385249
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatata 284  Q
    |||||||| ||| |||||||||||||||||||||| || ||||||    
T  33385293 agcaaaaccttacattttagattcattcaattaatgatatatata 33385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 44521370 - 44521326
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatata 284  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  44521370 agcaaaactttgaattttagattcattcaattaatggtgtatata 44521326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 41804964 - 41804843
Alignment:
Q  17 ttggttttgaagttgtaaatttgggaccaaaagaatttgcttgaggggctgaagatccaaaatctcaatggagtcattcaatgtacttaataaaacatcc 116  Q
    |||||||| |||||| |||||| ||||||  |||||||||||||||| |  |||| ||||||| | |||||| ||||||||||||||||||||||||||     
T  41804964 ttggttttcaagttgcaaatttaggaccagtagaatttgcttgagggaccaaagaaccaaaatatgaatggactcattcaatgtacttaataaaacatca 41804865  T
Q  117 cttacttatatttataaccata 138  Q
    ||||| | || |||||||||||    
T  41804864 cttacctttaattataaccata 41804843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 33075083 - 33075126
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  33075083 agcaaaactttatattttagattcattcaattaataacgtatat 33075126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 14772668 - 14772622
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatatagt 286  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||    
T  14772668 agcaaaactttatattttagattaattcaattaatgatgtatatagt 14772622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 71277 - 71320
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||    
T  71277 agcaaaaatctatattttagattcattcaattaatgatgtatat 71320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 5984105 - 5984062
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||||||||  |||||||||||||||||||||| ||||||||    
T  5984105 agcaaaactttgcattttagattcattcaattaatgatgtatat 5984062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 284
Target Start/End: Complemental strand, 15549434 - 15549403
Alignment:
Q  253 attttagattcattcaattaataatgtatata 284  Q
    ||||||||||||||||||||||||||||||||    
T  15549434 attttagattcattcaattaataatgtatata 15549403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 35032392 - 35032349
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| |||| |||||||||||||||||||||| ||||||||    
T  35032392 agcaaaaatttacattttagattcattcaattaattatgtatat 35032349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 280
Target Start/End: Original strand, 41814402 - 41814441
Alignment:
Q  241 gcaaaactttatattttagattcattcaattaataatgta 280  Q
    |||||| |||| ||||||||||||||||||||||||||||    
T  41814402 gcaaaaatttacattttagattcattcaattaataatgta 41814441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 26045283 - 26045317
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaat 274  Q
    ||||||| |||||||||||||||||||||||||||    
T  26045283 agcaaaaatttatattttagattcattcaattaat 26045317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 37554461 - 37554423
Alignment:
Q  248 tttatattttagattcattcaattaataatgtatatagt 286  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  37554461 tttattttttagattcattcaattaataatgtatgtagt 37554423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 286
Target Start/End: Complemental strand, 37685084 - 37685046
Alignment:
Q  248 tttatattttagattcattcaattaataatgtatatagt 286  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  37685084 tttattttttagattcattcaattaataatgtatgtagt 37685046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 31691378 - 31691337
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatata 284  Q
    |||| ||||||||| ||||||||||||||||| |||||||||    
T  31691378 aaaaatttatatttgagattcattcaattaatgatgtatata 31691337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 14642125 - 14642097
Alignment:
Q  253 attttagattcattcaattaataatgtat 281  Q
    |||||||||||||||||||||||||||||    
T  14642125 attttagattcattcaattaataatgtat 14642097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 19868940 - 19868980
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgta 280  Q
    ||||||| | ||||||||||||||||||| |||||||||||    
T  19868940 agcaaaaatctatattttagattcattcatttaataatgta 19868980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 30778032 - 30778064
Alignment:
Q  254 ttttagattcattcaattaataatgtatatagt 286  Q
    |||||||||||||||||||||||||||| ||||    
T  30778032 ttttagattcattcaattaataatgtatttagt 30778064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 4563875 - 4563919
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatata 284  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  4563875 agcaaaagtttatattttagattcattcaattaataatgtatata 4563919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 15859673 - 15859630
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| | ||||||||||||||||||||||||| ||||||||    
T  15859673 agcaaaaatctatattttagattcattcaattaatgatgtatat 15859630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 281
Target Start/End: Original strand, 31211242 - 31211272
Alignment:
Q  251 atattttagattcattcaattaataatgtat 281  Q
    |||||||||||||||||||||||||||||||    
T  31211242 atattttagattcattcaattaataatgtat 31211272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 32143528 - 32143482
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatatagt 286  Q
    |||||||||||| |||||| ||||||||||||||| | |||||||||    
T  32143528 agcaaaactttacattttaaattcattcaattaatgaagtatatagt 32143482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 604883 - 604916
Alignment:
Q  248 tttatattttagattcattcaattaataatgtat 281  Q
    ||||| ||||||||||||||||||||||||||||    
T  604883 tttattttttagattcattcaattaataatgtat 604916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Complemental strand, 26269407 - 26269374
Alignment:
Q  248 tttatattttagattcattcaattaataatgtat 281  Q
    ||||||||||||||||||| ||||||||||||||    
T  26269407 tttatattttagattcatttaattaataatgtat 26269374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 31175107 - 31175140
Alignment:
Q  248 tttatattttagattcattcaattaataatgtat 281  Q
    ||||||||||||||||||||||||||| ||||||    
T  31175107 tttatattttagattcattcaattaatgatgtat 31175140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 32218687 - 32218654
Alignment:
Q  251 atattttagattcattcaattaataatgtatata 284  Q
    |||||||||||||||||||||||| |||||||||    
T  32218687 atattttagattcattcaattaatgatgtatata 32218654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 23377963 - 23378003
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  23377963 aaaactttgcattttagattcattcaattaatgatgtatat 23378003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 4365 - 4408
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  4365 agcaaaactttatattttagattcattcaattaataacgtatat 4408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 48083626 - 48083583
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  48083626 agcaaaactttatattttagattcattcaattaataacgtatat 48083583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 34954018 - 34953975
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  34954018 agcaaaaatttatattttagattcattcaattaatgatgtatat 34953975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 42761471 - 42761512
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtat 281  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  42761471 agcaaaactttacattttagattcattcaattaatgatgtat 42761512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 13048675 - 13048719
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatata 284  Q
    ||||||| || |||||||||||||||||||||||| |||||||||    
T  13048675 agcaaaaattaatattttagattcattcaattaatgatgtatata 13048719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 13053672 - 13053716
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatata 284  Q
    ||||||| || |||||||||||||||||||||||| |||||||||    
T  13053672 agcaaaaattaatattttagattcattcaattaatgatgtatata 13053716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 286
Target Start/End: Original strand, 6758564 - 6758610
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatatagt 286  Q
    |||||||||||  |||||| ||||||||||||||| |||||||||||    
T  6758564 agcaaaactttgcattttacattcattcaattaatgatgtatatagt 6758610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Complemental strand, 13043451 - 13043418
Alignment:
Q  251 atattttagattcattcaattaataatgtatata 284  Q
    |||||||||||||||||||||||| |||||||||    
T  13043451 atattttagattcattcaattaatgatgtatata 13043418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 24624 - 24667
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||||| |||||||||||||||||||||||||||| ||||||    
T  24624 agcaaaacattatattttagattcattcaattaataacgtatat 24667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 22752578 - 22752621
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||    
T  22752578 agcaaaaatttatattttagattcattcaataaataatgtatat 22752621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 280
Target Start/End: Original strand, 21886485 - 21886525
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgta 280  Q
    ||||||| ||||||||||||||||||||||||||| |||||    
T  21886485 agcaaaaatttatattttagattcattcaattaatgatgta 21886525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 30138907 - 30138864
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatatagt 286  Q
    |||| |||| |||||||||||||||||||||| |||||||||||    
T  30138907 aaaaatttacattttagattcattcaattaatgatgtatatagt 30138864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 33935027 - 33935062
Alignment:
Q  251 atattttagattcattcaattaataatgtatatagt 286  Q
    |||||||||||||||||| |||||||||||||||||    
T  33935027 atattttagattcattcatttaataatgtatatagt 33935062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 277
Target Start/End: Original strand, 37489535 - 37489570
Alignment:
Q  242 caaaactttatattttagattcattcaattaataat 277  Q
    ||||| ||||||||||||||||||||||||||||||    
T  37489535 caaaaatttatattttagattcattcaattaataat 37489570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 44416652 - 44416613
Alignment:
Q  242 caaaactttatattttagattcattcaattaataatgtat 281  Q
    ||||| ||||||||||||||||||||||||||| ||||||    
T  44416652 caaaaatttatattttagattcattcaattaattatgtat 44416613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 4089910 - 4089868
Alignment:
Q  241 gcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||| ||||||||||| ||||||||||||||| ||||||||    
T  4089910 gcaaaaatttatattttatattcattcaattaatgatgtatat 4089868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 284
Target Start/End: Original strand, 9930408 - 9930450
Alignment:
Q  242 caaaactttatattttagattcattcaattaataatgtatata 284  Q
    ||||| ||||||||||||||||||| ||||||| |||||||||    
T  9930408 caaaaatttatattttagattcatttaattaattatgtatata 9930450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 2943334 - 2943293
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtat 281  Q
    |||||||  |||||||||| ||||||||||||||||||||||    
T  2943334 agcaaaaaattatattttacattcattcaattaataatgtat 2943293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Original strand, 31813431 - 31813472
Alignment:
Q  242 caaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||| |||| |||||||||||||||||||||| ||||||||    
T  31813431 caaaaatttacattttagattcattcaattaatgatgtatat 31813472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 286
Target Start/End: Complemental strand, 2534044 - 2534016
Alignment:
Q  258 agattcattcaattaataatgtatatagt 286  Q
    |||||||||||||||||||||||||||||    
T  2534044 agattcattcaattaataatgtatatagt 2534016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 283
Target Start/End: Complemental strand, 21586925 - 21586893
Alignment:
Q  251 atattttagattcattcaattaataatgtatat 283  Q
    |||||||||||||||||||||||| ||||||||    
T  21586925 atattttagattcattcaattaatgatgtatat 21586893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 24617829 - 24617861
Alignment:
Q  254 ttttagattcattcaattaataatgtatatagt 286  Q
    ||||||||||||||||| |||||||||||||||    
T  24617829 ttttagattcattcaataaataatgtatatagt 24617861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 18886430 - 18886387
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||    
T  18886430 agcaaaactttatattttagagtcattcaattaataacgtatat 18886387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 286
Target Start/End: Original strand, 33689258 - 33689293
Alignment:
Q  251 atattttagattcattcaattaataatgtatatagt 286  Q
    |||||||| |||||||||||||||||||||||||||    
T  33689258 atattttatattcattcaattaataatgtatatagt 33689293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 11746347 - 11746307
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||| |||| |||||||||||||||||||||| ||||||||    
T  11746347 aaaaatttacattttagattcattcaattaatgatgtatat 11746307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 3511727 - 3511770
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||||||||| |||||||||||||||||||||| ||||||||    
T  3511727 agcaaaactttacattttagattcattcaattaatgatgtatat 3511770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 38298109 - 38298151
Alignment:
Q  241 gcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  38298109 gcaaaattttatattttagattcattcaattaatgatgtatat 38298151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 273
Target Start/End: Original strand, 10308253 - 10308286
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaa 273  Q
    ||||||||||||||||||||||||||||||||||    
T  10308253 agcaaaactttatattttagattcattcaattaa 10308286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 18423913 - 18423953
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  18423913 aaaaatttatattttagattcattcaattaatgatgtatat 18423953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 35151781 - 35151737
Alignment:
Q  242 caaaactttatattttagattcattcaattaataatgtatatagt 286  Q
    ||||||||| |||||||||||||||||||| || |||||||||||    
T  35151781 caaaactttgtattttagattcattcaattgatgatgtatatagt 35151737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 21142212 - 21142169
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||    
T  21142212 agcaaaagtttatattttagattcatttaattaatgatgtatat 21142169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 35425270 - 35425313
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||    
T  35425270 agcaaaactttaaattttagattcattcatttaatgatgtatat 35425313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 40952470 - 40952427
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||    
T  40952470 agcaaaaatttatattttagattcattcaattaaatatgtatat 40952427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Complemental strand, 4406363 - 4406322
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtat 281  Q
    ||||||| |||||||||| |||||||||||||||| ||||||    
T  4406363 agcaaaaatttatattttggattcattcaattaatgatgtat 4406322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 24331451 - 24331484
Alignment:
Q  248 tttatattttagattcattcaattaataatgtat 281  Q
    ||||| ||||||||||||||||||||||||||||    
T  24331451 tttattttttagattcattcaattaataatgtat 24331484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 286
Target Start/End: Original strand, 36786181 - 36786214
Alignment:
Q  253 attttagattcattcaattaataatgtatatagt 286  Q
    |||||||||||||||||||||| |||||||||||    
T  36786181 attttagattcattcaattaatgatgtatatagt 36786214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 54508187 - 54508228
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtat 281  Q
    ||||||| ||||||||||||||||||||||| ||| ||||||    
T  54508187 agcaaaaatttatattttagattcattcaataaatgatgtat 54508228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 4484095 - 4484135
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||||  |||||||||||||||||||||| ||||||||    
T  4484095 aaaactttgcattttagattcattcaattaatgatgtatat 4484135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 4708655 - 4708615
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||| ||||||||||| ||||||| ||||||||||||||||    
T  4708655 aaaaatttatattttaaattcatttaattaataatgtatat 4708615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 16170931 - 16170971
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||||| ||||||||||||||||||||||  |||||||    
T  16170931 aaaactttacattttagattcattcaattaatggtgtatat 16170971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 281
Target Start/End: Original strand, 38938072 - 38938100
Alignment:
Q  253 attttagattcattcaattaataatgtat 281  Q
    |||||||||||||||||||||||||||||    
T  38938072 attttagattcattcaattaataatgtat 38938100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 286
Target Start/End: Original strand, 46803436 - 46803472
Alignment:
Q  250 tatattttagattcattcaattaataatgtatatagt 286  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  46803436 tatattttagattcattaaattaattatgtatatagt 46803472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 55416321 - 55416361
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||| ||||||||| ||||||||||||||||| ||||||||    
T  55416321 aaaaatttatatttgagattcattcaattaatgatgtatat 55416361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 10872794 - 10872751
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||    
T  10872794 agcaaaaatttatattttagattcattcaattaatgatgtatat 10872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 22497073 - 22497030
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||||||||| |||||||||||||||||||||||| ||||||    
T  22497073 agcaaaactttacattttagattcattcaattaataacgtatat 22497030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 283
Target Start/End: Complemental strand, 24722809 - 24722766
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||||||||||| |||||||||||| ||||||||||||||||||    
T  24722809 agcaaaactttacattttagattcactcaattaataatgtatat 24722766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 3648821 - 3648775
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatatagt 286  Q
    ||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  3648821 agcaaaactttatattttacattcattcaatcaatgatgtatatagt 3648775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 35987551 - 35987510
Alignment:
Q  242 caaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  35987551 caaaattttatattttagatttattcaattaataatgtatat 35987510  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 50466834 - 50466874
Alignment:
Q  243 aaaactttatattttagattcattcaattaataatgtatat 283  Q
    |||| ||||||||||||||||||||||||||| ||||||||    
T  50466834 aaaaatttatattttagattcattcaattaatgatgtatat 50466874  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 29389345 - 29389388
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||    
T  29389345 agcaaaaatttatattttagattcgttcaattaatgatgtatat 29389388  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 47334660 - 47334703
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||    
T  47334660 agcaaaactttgtattttaaattcattcaattaatgatgtatat 47334703  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 240 - 283
Target Start/End: Original strand, 51060681 - 51060724
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatat 283  Q
    ||||||| |||| |||||||||| ||||||||||||||||||||    
T  51060681 agcaaaaatttacattttagattaattcaattaataatgtatat 51060724  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 283
Target Start/End: Original strand, 26243710 - 26243740
Alignment:
Q  253 attttagattcattcaattaataatgtatat 283  Q
    |||||||||||||||||||||||||||||||    
T  26243710 attttagattcattcaattaataatgtatat 26243740  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 7601932 - 7601976
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgtatata 284  Q
    |||||||||||  ||||||||||||||||||||||  ||||||||    
T  7601932 agcaaaactttgaattttagattcattcaattaatggtgtatata 7601976  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 280
Target Start/End: Complemental strand, 45736809 - 45736769
Alignment:
Q  240 agcaaaactttatattttagattcattcaattaataatgta 280  Q
    ||||||| ||||||||||| ||||||||||||||| |||||    
T  45736809 agcaaaattttatattttaaattcattcaattaatgatgta 45736769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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