View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7396_low_15 (Length: 278)
Name: NF7396_low_15
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7396_low_15 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 6235245 - 6235499
Alignment:
| Q |
1 |
accccgaaaaagcaagacaaagtcacaagaataagaaagagaagattatatggtgaattaaattaagaagcattacatcatgcacaactagccgcagcgt |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6235245 |
accccgaaaaagcaatacaaagtcacaagaataagaaagagaagataatatggtgaattaaattaagaagaattacatcatgcacaactagccgcagcgt |
6235344 |
T |
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| Q |
101 |
cgacacattcaaatgtggagcctacaattggaccatgcatgagttttgtggaagtggaataatcagctacatacttctggttgtgtgtgagagcagtggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6235345 |
cgacacattcaaatgtggagcctacaattggaccatgcatgagttttgtggaagtggaataaacagctacatacttctggttgtgtgtgagagcagtggt |
6235444 |
T |
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| Q |
201 |
caatggtcatgccattcatttggtcatgaatgagaatggatggcaacaaaagaga |
255 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6235445 |
caatggtcatgccattcatttggtcatgaatgagaatggatggcaacaaaagaga |
6235499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 6166119 - 6166348
Alignment:
| Q |
17 |
acaaagtcacaagaataagaaagagaagattatatggtgaattaaattaagaagcattacatcatgcacaactagccgcagcgtcgacacattcaaatgt |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||| |||| ||||||||| ||||||| |
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| T |
6166119 |
acaaagtcacaagaataacaaagagaagattatatggtgaatgaaattaaaaagaattacatcatgcacaacaagccacagcatcgacacatccaaatgt |
6166218 |
T |
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| Q |
117 |
ggagcctacaattggaccatgcatgagttttgtggaagtggaataatcagctacatacttctggttgtgtgtgagagcagtggtcaatggtcatgccatt |
216 |
Q |
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| T |
6166219 |
ggagcctaaaattggaccatgcatgagctttctggaagtggaataaacagctacatatttctggttgtgtgtgagagcgg-------tggtcatgccatt |
6166311 |
T |
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| Q |
217 |
catttggtcatgaatgagaatggatggcaacaaaaga |
253 |
Q |
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| T |
6166312 |
catttggtcacgaatgagaatggatggcaacaaaaga |
6166348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 6242527 - 6242773
Alignment:
| Q |
1 |
accccgaaaaagcaagacaaagtcacaagaataagaaagagaagattatatggtgaattaaattaagaagcattacatcatgcacaactagccgcagcgt |
100 |
Q |
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|||||||||||| | |||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||||| || |||||||| |
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| T |
6242527 |
accccgaaaaagggatacaaagtcacaagaataacaaagagaagattatatggtgacttaaattaaaaacaattacatcatgcacaacaagtcgcagcgt |
6242626 |
T |
|
| Q |
101 |
cgacacattcaaatgtggagcctacaattggaccatgcatgagttttgtggaagtggaataatcagctacatacttctggttgtgtgtgagagcagtggt |
200 |
Q |
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| T |
6242627 |
cgacacatccaaatgcggagcctacaattagaccatgcatgagctttgtggaagtaaaataaacagcaacatacttttggttgtgtgtgagagcag---- |
6242722 |
T |
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| Q |
201 |
caatggtcatgccattcatttggtcatgaatgagaatggatggcaacaaaagag |
254 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||||||| |||| |
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| T |
6242723 |
---tggtcatgccattcgtttggtcacgaatgagaatggatcgcaacaagagag |
6242773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 6897374 - 6897539
Alignment:
| Q |
82 |
gcacaactagccgcagcgtcgacacattcaaatgtggagcctacaattggaccatgcatgagttttgtggaagtggaataatcagctacatacttctggt |
181 |
Q |
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||||||| || ||||||||| |||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
6897374 |
gcacaacaagtcgcagcgtctacacatccaaatgtcgagcctacaattggaccatgcatgagctttgtggaagtggaataaacagctacatacttctggt |
6897473 |
T |
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| Q |
182 |
tgtgtgtgagagcagtggtcaatggtcatgccattcatttggtcatgaatgagaatggatggcaacaaaagag |
254 |
Q |
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||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
6897474 |
tgtgtgtgagagcag-------tggtcatgccattcatttggtcacgagtgagaatggatggcaacaaaagag |
6897539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 82 - 254
Target Start/End: Original strand, 6879802 - 6879967
Alignment:
| Q |
82 |
gcacaactagccgcagcgtcgacacattcaaatgtggagcctacaattggaccatgcatgagttttgtggaagtggaataatcagctacatacttctggt |
181 |
Q |
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||||||| || ||||| ||| |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| || |
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| T |
6879802 |
gcacaacaagtcgcagtgtctacacatccaaatgacgagcctacaattggaccatgcatgagctttgtggaagtggaataaacagctacatacttctagt |
6879901 |
T |
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| Q |
182 |
tgtgtgtgagagcagtggtcaatggtcatgccattcatttggtcatgaatgagaatggatggcaacaaaagag |
254 |
Q |
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| T |
6879902 |
tgtgtgtaagagcag-------tggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagag |
6879967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 17 - 254
Target Start/End: Original strand, 6256446 - 6256673
Alignment:
| Q |
17 |
acaaagtcacaagaataagaaagagaagattatatggtgaattaaattaagaagcattacatcatgcacaactagccgcagcgtcgacacattcaaatgt |
116 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||||| | ||| | || | ||||| ||| || |||||| |
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| T |
6256446 |
acaaaatcacaagaataacaaagagaagattatatggtgaattatattaaaaagaattacat---gtgcaataaacctccgcgtcaacatatccaaatgc |
6256542 |
T |
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| Q |
117 |
ggagcctacaattggaccatgcatgagttttgtggaagtggaataatcagctacatacttctggttgtgtgtgagagcagtggtcaatggtcatgccatt |
216 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||| || |||| |||| |||||||||||| ||||||| | ||||||||||||| |
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| T |
6256543 |
ggggcctacaattggaccatgcatgagctttgtggaagtggaacaaacagcgacatccttctggttgtgcatgagagcgg-------tggtcatgccatt |
6256635 |
T |
|
| Q |
217 |
catttggtcatgaatgagaatggatggcaacaaaagag |
254 |
Q |
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|| ||||||||||||| |||||||| ||||||||||| |
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| T |
6256636 |
gatctggtcatgaatgataatggatgccaacaaaagag |
6256673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 185
Target Start/End: Original strand, 6262991 - 6263126
Alignment:
| Q |
47 |
tatatggtgaattaaattaagaagcattacatcatgcacaactagccgcagcgtcgacacattcaaatgtggagcctacaattggaccatgcatgagttt |
146 |
Q |
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|||||||||||||||||||| ||| |||||| || |||| || | | ||||| |||||| |||| |||| |||| ||| |||||||||||| | || |
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| T |
6262991 |
tatatggtgaattaaattaaaaagaattacaa---gcgcaacaagtctccgcgtccacacatccaaacgtggggcctgcaactggaccatgcatcaactt |
6263087 |
T |
|
| Q |
147 |
tgtggaagtggaataatcagctacatacttctggttgtg |
185 |
Q |
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| T |
6263088 |
tgtggaagtggaacaaacagccacatccttctggttgtg |
6263126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 6724662 - 6724621
Alignment:
| Q |
210 |
tgccattcatttggtcatgaatgagaatggatggcaacaaaa |
251 |
Q |
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|||||||||| |||||| |||||||| ||||||||||||||| |
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| T |
6724662 |
tgccattcatctggtcacgaatgagattggatggcaacaaaa |
6724621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 6851673 - 6851632
Alignment:
| Q |
210 |
tgccattcatttggtcatgaatgagaatggatggcaacaaaa |
251 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||| |
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| T |
6851673 |
tgccattcatctggtcacaaatgagaatggatggcaacaaaa |
6851632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 14105 - 14064
Alignment:
| Q |
210 |
tgccattcatttggtcatgaatgagaatggatggcaacaaaa |
251 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14105 |
tgccattcatttggtcacaaatgagaatggatggcaacaaaa |
14064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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