View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7396_low_4 (Length: 590)
Name: NF7396_low_4
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7396_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 48 - 583
Target Start/End: Complemental strand, 34407641 - 34407099
Alignment:
| Q |
48 |
ctctgcaccatgtaatctcctgcaagttgaatggaaccacaaacattcttctcgacatcctcccaaatcttctcattttgtcgtttccaaatgcaccaca |
147 |
Q |
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| T |
34407641 |
ctctgcaccatgtaatctcctgcaagttgaatggaaccacaaacattcttctcgacatcctcccaaatcttctcattttgtcgtttccaaatgcaccaca |
34407542 |
T |
|
| Q |
148 |
aaatcatagcaaaatcaattaatttatgtggttgcaagtttgacaagatgatgaataaaagagatataaagtcgccaacgattaacatcaaagaattaat |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34407541 |
aaatcatagcaaaatcaattaatttatgtggttgcaagtttgacaagatgatgaataaaagagatataaagtcgccaacgattaacatcaaagaattaat |
34407442 |
T |
|
| Q |
248 |
atgtgaccacgaaccaatcgtctcct----ttccttaggctttctgcaaccgaggaacaaacgccattcattttcgtagtgatttttacaaaaaggacat |
343 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
34407441 |
atgtgaccacgaaccaatcgtctcccatacttccttaggctttctgcaaccgaggaacaaatgccattcattttagtagtgatttttacaaaaaggacat |
34407342 |
T |
|
| Q |
344 |
gcatatgtacattgaacacctttccattgtagtcggtctcttgttggaagacatcctctcgatactctccacaaaaatcttttaactctttgaggtattt |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34407341 |
gcatatgtacattgaacacctttccattgtagtcggtctcttgttggaagacatcctctcgctactctccacaaaaatcttttaactctttgaggtattt |
34407242 |
T |
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| Q |
444 |
gt---aagctctatagtttactccaatcaccttaaattcgatactcctcattgtcaatgagtgtttccattgcggactagtatgcagactttatcatata |
540 |
Q |
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| T |
34407241 |
gtaagaagctatatagtttactccaatcaccttaaattcgatactcctcattgtcaatgagtgtttccattgcggactagtatgcagactttatcatata |
34407142 |
T |
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| Q |
541 |
aatgcctttgttgttgtatttccacactctgatatattcttcg |
583 |
Q |
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| T |
34407141 |
aatgcctttgttgttgtatttccacactctgatatattcttcg |
34407099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 324 - 513
Target Start/End: Complemental strand, 2422287 - 2422098
Alignment:
| Q |
324 |
gatttttacaaaaaggacatgcatatgtacattgaacacctttccattgtagtcggtctcttgttggaagacatcctctcgatactctccacaaaaatct |
423 |
Q |
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|||||| ||||||||||||||||| |||||||||||||||||| | ||| | | || ||||||| ||| || ||| || |||| |||||| ||| | |
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| T |
2422287 |
gattttcacaaaaaggacatgcatttgtacattgaacaccttttctttgaaatatatcccttgttgaaaggcaacctttcacaactcgccacaataatat |
2422188 |
T |
|
| Q |
424 |
tttaactctttgaggtatttgtaagctctatagtttactccaatcaccttaaattcgatactcctcattgtcaatgagtgtttccattgc |
513 |
Q |
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|||||||||||| ||||| | ||||| |||| |||| |||||||| ||||||||||| |||||| |||||||||||||||||||| |
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| T |
2422187 |
tttaactctttgtggtatcttcaagcttcatagcttaccccaatcactcggaattcgatacttctcattatcaatgagtgtttccattgc |
2422098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 32912422 - 32912322
Alignment:
| Q |
93 |
ttcttctcgacatcctcccaaatcttctcattttgtcgtttccaaatgcaccacaaaatcatagcaaaatcaattaatttatgtggttgcaagtttgaca |
192 |
Q |
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||||||||||||| ||||| |||||||||||||| ||||||||||||||||| | ||| |||||||||||||| |||||| || ||||| ||||||| |
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| T |
32912422 |
ttcttctcgacattgtcccatatcttctcattttgccgtttccaaatgcaccatatcatcgtagcaaaatcaattgttttatgcggctgcaaatttgaca |
32912323 |
T |
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| Q |
193 |
a |
193 |
Q |
| |
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| |
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| T |
32912322 |
a |
32912322 |
T |
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