View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7396_low_6 (Length: 557)
Name: NF7396_low_6
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7396_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 262
Target Start/End: Original strand, 59913 - 60157
Alignment:
| Q |
18 |
gaaaatagtttatgttatgttacttgggcaatctagcaatgaaattgatatcttggactgtctttatactttgttctgttttgtgtttttgatattatgg |
117 |
Q |
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| T |
59913 |
gaaaatagtttatgttatgttacttgggcaatctagcaatgaaattgatatcttggactgtctttatactttgttctgttttgtgtttttgatattatgg |
60012 |
T |
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| Q |
118 |
gtaagcttgctttgaatagtcattcttgaaagtactctttcaattttgaacataattattctgaaaaaagattcaatgatgccagaaaaacataaggcta |
217 |
Q |
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| T |
60013 |
ctaagcttgctttgaatagtcattcttgaaagtactcttccaattttgaacataattattctgaaaaaagattcaatgatgccagaaaaacataagggta |
60112 |
T |
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| Q |
218 |
agttaaatcagtactcacaattggacatgagtgaattgacatgtg |
262 |
Q |
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| T |
60113 |
agttaaatcagtactcacaattggacatgagtgaattgacatgtg |
60157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 329 - 547
Target Start/End: Original strand, 60224 - 60439
Alignment:
| Q |
329 |
agttttaactcttccataaaatggttctgataatatgaaattcggtcaaataataagttaaatatggtcaaaagattgtccagctaagattgaaactcat |
428 |
Q |
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| T |
60224 |
agttttaactcttcgataaaatggttctgataatatgaaatttggccaaataataaattaaatatggtcaaaagattgtccagctaagattgaaactca- |
60322 |
T |
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| Q |
429 |
atcgtttttaaaataagttaattaaacagttgagtcgagctgttgataagtgactcatatacgactctaactctaagtcgtgattttaaattatttcttt |
528 |
Q |
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| T |
60323 |
atcgtttttaa--taagttaattaaccagttgagtcgagctgttgataagtgaatcatatacgactctaactctaagtcgtgattttaaattatttcttt |
60420 |
T |
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| Q |
529 |
ccacgacattaaatctctg |
547 |
Q |
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| T |
60421 |
ccatgacattaaatctctg |
60439 |
T |
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