View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7396_low_7 (Length: 469)

Name: NF7396_low_7
Description: NF7396
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7396_low_7
NF7396_low_7
[»] chr6 (10 HSPs)
chr6 (229-451)||(4045708-4045930)
chr6 (1-143)||(4046015-4046157)
chr6 (20-143)||(4125076-4125201)
chr6 (3-137)||(4105576-4105711)
chr6 (232-343)||(4116180-4116292)
chr6 (232-343)||(4130244-4130356)
chr6 (1-143)||(4054484-4054626)
chr6 (1-143)||(17404436-17404578)
chr6 (232-351)||(4054242-4054361)
chr6 (231-351)||(17404696-17404816)
[»] scaffold1770 (1 HSPs)
scaffold1770 (232-343)||(979-1091)
[»] chr3 (3 HSPs)
chr3 (1-143)||(45865729-45865871)
chr3 (386-428)||(30614024-30614066)
chr3 (381-417)||(4160056-4160092)
[»] chr4 (3 HSPs)
chr4 (381-451)||(5350201-5350271)
chr4 (384-417)||(52467157-52467190)
chr4 (381-417)||(12743725-12743761)
[»] chr2 (3 HSPs)
chr2 (386-431)||(29989444-29989489)
chr2 (386-451)||(41446433-41446498)
chr2 (381-417)||(11690823-11690859)
[»] chr1 (2 HSPs)
chr1 (379-452)||(15820595-15820666)
chr1 (380-417)||(37559660-37559697)
[»] chr7 (1 HSPs)
chr7 (381-417)||(6430463-6430499)
[»] chr5 (1 HSPs)
chr5 (381-417)||(534094-534130)


Alignment Details
Target: chr6 (Bit Score: 174; Significance: 2e-93; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 229 - 451
Target Start/End: Complemental strand, 4045930 - 4045708
Alignment:
Q  229 cacaggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgcggtactcttccttttga 328  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  4045930 cacaggttatctctgggaagttatatgatggatccaaggtagatatttggaattgtggtacgttactgtatgcacttctatgcggtgctcttccttttga 4045831  T
Q  329 tgatgaaaatattcccaccctctacnnnnnnntaaaggtacacattgatgataattattgtgaattcggactcaaaactcacactaataatcttatatgt 428  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  4045830 tgatgaaaatattcccaccctctacaaaaaaataaaggtacacattgatgataattattgtgaatttggactcaaaattcacaccaataatcttatatgt 4045731  T
Q  429 gtgaagttaaagaaagtagtaac 451  Q
    |||||||||||||||||||||||    
T  4045730 gtgaagttaaagaaagtagtaac 4045708  T

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Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 4046157 - 4046015
Alignment:
Q  1 tcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagtta 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4046157 tcatagagacttaaagcctgaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagtta 4046058  T
Q  101 cttaagacaagatgtggaagtcttaactatgcagctcctgagg 143  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4046057 cttaagacaagatgtggaagtcttaactatgcagctcctgagg 4046015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 4125076 - 4125201
Alignment:
Q  20 gaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagatgtggaa 119  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4125076 gaaactatacttttggactcaaaatttaatgtcaagattactgattttggcttgagcaacacaatgcaacatggtcagttacttaagacaagttgtggaa 4125175  T
Q  120 gtct--taactatgcagctcctgagg 143  Q
    ||||  |||||||| |||||||||||    
T  4125176 gtcttataactatgaagctcctgagg 4125201  T

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Target: chr6; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 3 - 137
Target Start/End: Original strand, 4105576 - 4105711
Alignment:
Q  3 atagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagttact 102  Q
    |||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| |||| || ||||||    
T  4105576 atagagacttaaagtcggaaactatacttttggactcaaaattcaatgtcaagattactaattttggctttagcaacacaatgcagcatgatcggttact 4105675  T
Q  103 taagac-aagatgtggaagtcttaactatgcagctc 137  Q
    |||||| ||| |||| ||||||||||||||||||||    
T  4105676 taagacaaagttgtgaaagtcttaactatgcagctc 4105711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 343
Target Start/End: Original strand, 4116180 - 4116292
Alignment:
Q  232 aggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgc-ggtactcttccttttgatg 330  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||| ||| |||| |||| |||||||| | |||||| ||||||||||||    
T  4116180 aggttatctctgggaagttatatgatggatcaaaaatagatatttggaattgtggtacgatactctatgcacttctattcgggtactattccttttgatg 4116279  T
Q  331 atgaaaatattcc 343  Q
    |||||||||||||    
T  4116280 atgaaaatattcc 4116292  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 343
Target Start/End: Original strand, 4130244 - 4130356
Alignment:
Q  232 aggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgc-ggtactcttccttttgatg 330  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||| ||| |||| |||| |||||||| | |||||| ||||||||||||    
T  4130244 aggttatctctgggaagttatatgatggatcaaaaatagatatttggaattgtggtacgatactctatgcacttctattcgggtactattccttttgatg 4130343  T
Q  331 atgaaaatattcc 343  Q
    |||||||||||||    
T  4130344 atgaaaatattcc 4130356  T

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Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 4054626 - 4054484
Alignment:
Q  1 tcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagtta 100  Q
    |||||||||||| ||||| || | | ||||||||||||||||||  | | |||||||| ||||||||||| |||||||||  ||||   |||| || ||     
T  4054626 tcatagagacttgaagcctgagaatttacttttggactcaaaatggagtgtcaagattgctgattttggcctgagcaacatcatgcgtgatggccacttt 4054527  T
Q  101 cttaagacaagatgtggaagtcttaactatgcagctcctgagg 143  Q
    ||||||||||| |||||||| | ||||||||||||||| ||||    
T  4054526 cttaagacaagttgtggaagccctaactatgcagctcccgagg 4054484  T

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Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 17404436 - 17404578
Alignment:
Q  1 tcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagtta 100  Q
    |||||||||| | || || |||| | ||||||||||||||||||  | | |||||||| ||||||||||| |||||||||  ||||   ||||||| ||     
T  17404436 tcatagagacctgaaacccgaaaatttacttttggactcaaaatggagtgtcaagattgctgattttggcctgagcaacatcatgcgtgatggtcacttt 17404535  T
Q  101 cttaagacaagatgtggaagtcttaactatgcagctcctgagg 143  Q
    ||||||||||| || ||||| |  |||||||||||||| ||||    
T  17404536 cttaagacaagttgcggaagccccaactatgcagctccagagg 17404578  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 351
Target Start/End: Complemental strand, 4054361 - 4054242
Alignment:
Q  232 aggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgcggtactcttccttttgatga 331  Q
    |||||||||||||||||||||||| |||| |  |||||||| ||||||  |||||     |  | |||| |||||| || || ||||| |||||||||||    
T  4054361 aggttatctctgggaaattatatgctggacctgaggtagatgtttggagctgtggtgtaattttatatgcacttctctgtggcactctaccttttgatga 4054262  T
Q  332 tgaaaatattcccaccctct 351  Q
    |||||||||||||| |||||    
T  4054261 tgaaaatattcccaacctct 4054242  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 231 - 351
Target Start/End: Original strand, 17404696 - 17404816
Alignment:
Q  231 caggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgcggtactcttccttttgatg 330  Q
    ||||||||||||||||||||||||| |||| |  | |||||| ||||||  |||||     |  | |||| |||||| || || ||||||||||||||||    
T  17404696 caggttatctctgggaaattatatgctggacctgaagtagatgtttggagctgtggtgtaattttatatgcacttctctgtggcactcttccttttgatg 17404795  T
Q  331 atgaaaatattcccaccctct 351  Q
    |||||||||| |||| |||||    
T  17404796 atgaaaatatccccaacctct 17404816  T

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Target: scaffold1770 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 232 - 343
Target Start/End: Original strand, 979 - 1091
Alignment:
Q  232 aggttatctctgggaaattatatgatggatccaaggtagatatttggaattgtggcacgttactgtatgtacttctatgc-ggtactcttccttttgatg 330  Q
    |||||||||||||||| |||||||||||||| ||  ||||||||||||||||||| ||| |||| |||| |||||||| | |||||| ||||||||||||    
T  979 aggttatctctgggaagttatatgatggatcaaaaatagatatttggaattgtggtacgatactctatgcacttctattcgggtactattccttttgatg 1078  T
Q  331 atgaaaatattcc 343  Q
    |||||||||||||    
T  1079 atgaaaatattcc 1091  T

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Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 45865871 - 45865729
Alignment:
Q  1 tcatagagacttaaagccagaaactatacttttggactcaaaattcaatatcaagattactgattttggcttgagcaacacaatgcaacatggtcagtta 100  Q
    |||||||||| | || || |||| |||||||||||||||||||   | | |||| ||| |||||||||||||||||| ||  ||||   ||||||| |||    
T  45865871 tcatagagacctgaaacctgaaaatatacttttggactcaaaaaagagtgtcaaaattgctgattttggcttgagcagcaacatgcgtgatggtcactta 45865772  T
Q  101 cttaagacaagatgtggaagtcttaactatgcagctcctgagg 143  Q
    ||||| ||||| |||||||| | ||||||||||||||| ||||    
T  45865771 cttaatacaagttgtggaagccctaactatgcagctccagagg 45865729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 386 - 428
Target Start/End: Complemental strand, 30614066 - 30614024
Alignment:
Q  386 ttgtgaattcggactcaaaactcacactaataatcttatatgt 428  Q
    ||||||||||||||||||| ||||||| ||||| |||||||||    
T  30614066 ttgtgaattcggactcaaatctcacacaaataaacttatatgt 30614024  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 4160056 - 4160092
Alignment:
Q  381 aattattgtgaattcggactcaaaactcacactaata 417  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  4160056 aattgttgtgaattcggactcaaaactcacaccaata 4160092  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 451
Target Start/End: Complemental strand, 5350271 - 5350201
Alignment:
Q  381 aattattgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaac 451  Q
    |||| ||||||||||||||||||| ||||||| ||||| ||||  |||||||||| || ||||||||||||    
T  5350271 aattgttgtgaattcggactcaaatctcacaccaataaacttaggtgtgtgaagtaaaggaaagtagtaac 5350201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 52467157 - 52467190
Alignment:
Q  384 tattgtgaattcggactcaaaactcacactaata 417  Q
    ||||||||||||||||||||||||||||| ||||    
T  52467157 tattgtgaattcggactcaaaactcacaccaata 52467190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Original strand, 12743725 - 12743761
Alignment:
Q  381 aattattgtgaattcggactcaaaactcacactaata 417  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  12743725 aattgttgtgaattcggactcaaaactcacaccaata 12743761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 431
Target Start/End: Original strand, 29989444 - 29989489
Alignment:
Q  386 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtg 431  Q
    ||||||||||||||||||| ||||||||||||| |||| |||||||    
T  29989444 ttgtgaattcggactcaaatctcacactaataaacttagatgtgtg 29989489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 386 - 451
Target Start/End: Complemental strand, 41446498 - 41446433
Alignment:
Q  386 ttgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaac 451  Q
    |||||||||| |||||||||||||||  ||||| |||| ||||||| ||  |||||||||||||||    
T  41446498 ttgtgaattcagactcaaaactcacaacaataaacttaaatgtgtggagcaaaagaaagtagtaac 41446433  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 11690859 - 11690823
Alignment:
Q  381 aattattgtgaattcggactcaaaactcacactaata 417  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  11690859 aattgttgtgaattcggactcaaaactcacaccaata 11690823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 15820666 - 15820595
Alignment:
Q  379 ataattattgtgaattcggactcaaaactcacactaataatcttatatgtgtgaagttaaagaaagtagtaact 452  Q
    ||||| |||||||||||||||||||||||  ||| ||||| |||| ||||||| ||  || |||||||||||||    
T  15820666 ataataattgtgaattcggactcaaaact--caccaataaacttagatgtgtggagcaaaggaaagtagtaact 15820595  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 417
Target Start/End: Original strand, 37559660 - 37559697
Alignment:
Q  380 taattattgtgaattcggactcaaaactcacactaata 417  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  37559660 taattgttgtgaattcggactcaaaactcacaccaata 37559697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 6430499 - 6430463
Alignment:
Q  381 aattattgtgaattcggactcaaaactcacactaata 417  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  6430499 aattgttgtgaattcggactcaaaactcacaccaata 6430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 381 - 417
Target Start/End: Complemental strand, 534130 - 534094
Alignment:
Q  381 aattattgtgaattcggactcaaaactcacactaata 417  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  534130 aattgttgtgaattcggactcaaaactcacaccaata 534094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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