View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7397_high_2 (Length: 406)

Name: NF7397_high_2
Description: NF7397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7397_high_2
NF7397_high_2
[»] chr8 (13 HSPs)
chr8 (1-362)||(43907811-43908172)
chr8 (187-298)||(4558681-4558792)
chr8 (191-283)||(34563137-34563229)
chr8 (228-304)||(40280275-40280351)
chr8 (186-280)||(44865659-44865753)
chr8 (186-297)||(29699136-29699247)
chr8 (269-304)||(33553227-33553262)
chr8 (267-298)||(42237498-42237529)
chr8 (268-298)||(35374449-35374479)
chr8 (187-239)||(773169-773221)
chr8 (269-297)||(773294-773322)
chr8 (269-297)||(778354-778382)
chr8 (269-297)||(787788-787816)
[»] chr2 (13 HSPs)
chr2 (191-289)||(31461325-31461423)
chr2 (187-293)||(33197320-33197426)
chr2 (225-298)||(32633693-32633765)
chr2 (187-298)||(11393441-11393553)
chr2 (187-298)||(11410102-11410214)
chr2 (219-298)||(28803582-28803661)
chr2 (255-294)||(42457899-42457938)
chr2 (266-304)||(3227731-3227769)
chr2 (228-298)||(10150679-10150749)
chr2 (227-298)||(31228893-31228966)
chr2 (225-298)||(3673728-3673801)
chr2 (268-304)||(750460-750496)
chr2 (187-283)||(3102576-3102672)
[»] chr5 (10 HSPs)
chr5 (187-298)||(9202824-9202935)
chr5 (267-298)||(12595816-12595847)
chr5 (267-297)||(10363713-10363743)
chr5 (265-295)||(12425532-12425562)
chr5 (187-281)||(26516181-26516275)
chr5 (267-304)||(12242758-12242795)
chr5 (267-295)||(11835240-11835268)
chr5 (190-298)||(35135738-35135846)
chr5 (201-304)||(37611263-37611364)
chr5 (201-304)||(37787993-37788094)
[»] chr1 (15 HSPs)
chr1 (186-298)||(17269133-17269244)
chr1 (219-299)||(45234112-45234192)
chr1 (267-304)||(14737775-14737812)
chr1 (267-304)||(48748653-48748690)
chr1 (246-298)||(11211060-11211112)
chr1 (187-231)||(21516256-21516300)
chr1 (256-294)||(15477530-15477568)
chr1 (191-241)||(24153164-24153214)
chr1 (267-304)||(50319255-50319292)
chr1 (191-235)||(37236-37280)
chr1 (266-294)||(8081849-8081877)
chr1 (308-336)||(17631039-17631067)
chr1 (272-304)||(29834953-29834985)
chr1 (201-241)||(36602687-36602727)
chr1 (266-294)||(47002954-47002982)
[»] scaffold0024 (2 HSPs)
scaffold0024 (187-298)||(27459-27570)
scaffold0024 (267-295)||(21357-21385)
[»] chr7 (8 HSPs)
chr7 (188-279)||(6552365-6552456)
chr7 (234-293)||(21853197-21853256)
chr7 (187-240)||(5630049-5630102)
chr7 (227-304)||(7244625-7244702)
chr7 (267-304)||(34035902-34035939)
chr7 (187-235)||(8680878-8680926)
chr7 (267-295)||(30180014-30180042)
chr7 (252-304)||(33601163-33601215)
[»] chr6 (9 HSPs)
chr6 (251-298)||(10728579-10728626)
chr6 (212-298)||(10749304-10749389)
chr6 (187-283)||(5328857-5328953)
chr6 (188-299)||(6078364-6078475)
chr6 (267-304)||(2205638-2205675)
chr6 (267-304)||(5731555-5731592)
chr6 (235-295)||(264302-264362)
chr6 (267-295)||(9093635-9093663)
chr6 (251-295)||(9559620-9559664)
[»] chr4 (7 HSPs)
chr4 (307-363)||(25487465-25487521)
chr4 (187-240)||(4684243-4684296)
chr4 (251-296)||(49803158-49803203)
chr4 (267-295)||(25885822-25885850)
chr4 (226-298)||(30024622-30024694)
chr4 (267-303)||(43505919-43505955)
chr4 (268-304)||(52294036-52294072)
[»] chr3 (8 HSPs)
chr3 (187-283)||(54775011-54775107)
chr3 (251-294)||(849609-849652)
chr3 (267-298)||(10101552-10101583)
chr3 (267-298)||(10212477-10212508)
chr3 (267-298)||(15304423-15304454)
chr3 (228-298)||(3182438-3182508)
chr3 (187-241)||(20874433-20874487)
chr3 (213-281)||(16790181-16790249)
[»] scaffold0590 (1 HSPs)
scaffold0590 (189-283)||(1165-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (189-283)||(2716-2810)


Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 43908172 - 43907811
Alignment:
Q  1 ccataatgagtgaaattaaaaatcttcaattagtatttttggatcaatcaatttagtcttgaagtcctaaagtacaaatgtgattgaggatcattttaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908172 ccataatgagtgaaattaaaaatcttcaattagtatttttggatcaatcaatttagtcttgaagtcctaaagtacaaatgtgattgaggatcattttaga 43908073  T
Q  101 atttcgttaatttcaagactaaactctctaatcattacaatttcatgactaaatcagtgtttcactatagtaccatatagagatcatttggataaacatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43908072 atttcgttaatttcaagactaaactctctaatcattacaatttcatgactaaatcagtgtttcactatagtaccatatagagatcatttggataaacatc 43907973  T
Q  201 ttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43907972 ttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagtcaaattgttttcataag 43907873  T
Q  301 ctatgtcaagtgtttatgtcaatagataaactcaaatgagttaatcaaaataggcctatagt 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907872 ctatgtcaagtgtttatgtcaatagataaactcaaatgagttaatcaaaataggcctatagt 43907811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 4558681 - 4558792
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 286  Q
    |||||||||||| ||||||||  | |||||| |||||| |||||| || |||||| |||  || ||| ||||||||   |||||||||||||||||||||    
T  4558681 tttggataaacaacttaattacgcgcttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaataaagttaa 4558780  T
Q  287 attgttttcata 298  Q
    ||| ||||||||    
T  4558781 attattttcata 4558792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 283
Target Start/End: Original strand, 34563137 - 34563229
Alignment:
Q  191 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 283  Q
    |||||||| ||||||||||| |||||| ||||||  ||||||||||||||| ||| ||| ||||||||||||    ||| |||||||||||||    
T  34563137 gataaacaacttaattaaacgcttatagcataaacatttatcatataagtgcttatatataagttatttctatgacaaaggataaaataaagt 34563229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 304
Target Start/End: Complemental strand, 40280351 - 40280275
Alignment:
Q  228 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||||||||||  || ||| ||||||||||||    ||||||||||||||||| ||||||||||||||||||||    
T  40280351 ttatcatataagtgcctatatataagttatttctacaacaaaagataaaataaagtaaaattgttttcataagctat 40280275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 280
Target Start/End: Complemental strand, 44865753 - 44865659
Alignment:
Q  186 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataa 280  Q
    ||||||||||||| ||||||||||  |||||| ||| || ||||||| |||||||| |||| || ||| |||||||| || ||||||| ||||||    
T  44865753 atttggataaacaacttaattaaatgcttatagcattaaagtttatcttataagtgcttacttataagctatttctatcgcaaaagattaaataa 44865659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 297
Target Start/End: Original strand, 29699136 - 29699247
Alignment:
Q  186 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 285  Q
    ||||||||||||  |||| ||||   |||||| ||||||| |||||||||||| || |||  |||||||||||||||    ||||||||||||||||| |    
T  29699136 atttggataaacgacttagttaagtgcttatagcataaatatttatcatataaatgcttatgtacaagttatttctataacaaaagataaaataaagtca 29699235  T
Q  286 aattgttttcat 297  Q
    || |||| ||||    
T  29699236 aaatgttgtcat 29699247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 33553227 - 33553262
Alignment:
Q  269 aagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||||||||||| ||||||||||||||||||||    
T  33553227 aagataaaataaagtcaaattgttttcataagctat 33553262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 42237529 - 42237498
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcata 298  Q
    ||||||||||||||||||||||||||||||||    
T  42237529 aaaagataaaataaagttaaattgttttcata 42237498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 298
Target Start/End: Complemental strand, 35374479 - 35374449
Alignment:
Q  268 aaagataaaataaagttaaattgttttcata 298  Q
    |||||||||||||||||||||||||||||||    
T  35374479 aaagataaaataaagttaaattgttttcata 35374449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 773169 - 773221
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataag 239  Q
    |||||||||||| ||| ||| ||| |||||| |||||||||||||||| ||||    
T  773169 tttggataaacaactttattcaacacttatagcataaatgtttatcatctaag 773221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 773294 - 773322
Alignment:
Q  269 aagataaaataaagttaaattgttttcat 297  Q
    |||||||||||||||||||||||||||||    
T  773294 aagataaaataaagttaaattgttttcat 773322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 778354 - 778382
Alignment:
Q  269 aagataaaataaagttaaattgttttcat 297  Q
    |||||||||||||||||||||||||||||    
T  778354 aagataaaataaagttaaattgttttcat 778382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 297
Target Start/End: Original strand, 787788 - 787816
Alignment:
Q  269 aagataaaataaagttaaattgttttcat 297  Q
    |||||||||||||||||||||||||||||    
T  787788 aagataaaataaagttaaattgttttcat 787816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 191 - 289
Target Start/End: Original strand, 31461325 - 31461423
Alignment:
Q  191 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaatt 289  Q
    |||||||| ||||||||| | ||| || |||||| || ||||||||||||||||| ||| ||| ||||||||    ||||||||||||||||| |||||    
T  31461325 gataaacaacttaattaagcacttctagcataaacgtatatcatataagtggttatatataagctatttctataacaaaagataaaataaagtcaaatt 31461423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 33197426 - 33197320
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 286  Q
    |||||||||||| || |||||||| |||||| |||||| | |||||||||||||| |||  || ||| ||||||||    |||||||| |||||||| ||    
T  33197426 tttggataaacaactaaattaaacacttataacataaacgcttatcatataagtgcttatctataagctatttctataacaaaagatagaataaagtcaa 33197327  T
Q  287 attgttt 293  Q
     ||||||    
T  33197326 gttgttt 33197320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 225 - 298
Target Start/End: Complemental strand, 32633765 - 32633693
Alignment:
Q  225 tgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    |||||||||||||| ||||||||||  |||||||||||  | |||||||||| |||| | ||||||||||||||    
T  32633765 tgtttatcatataattggttacatatgagttatttctatag-aaaagataaactaaaatcaaattgttttcata 32633693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 11393553 - 11393441
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 286  Q
    |||||||||||| ||||||||| | |||||| || || ||||||||||||||||| |||  || ||| ||||||||    |||||||| |||||| | ||    
T  11393553 tttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaa 11393454  T
Q  287 att-gttttcata 298  Q
    ||| |||||||||    
T  11393453 attcgttttcata 11393441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 11410214 - 11410102
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 286  Q
    |||||||||||| ||||||||| | |||||| || || ||||||||||||||||| |||  || ||| ||||||||    |||||||| |||||| | ||    
T  11410214 tttggataaacagcttaattaagcacttatagcacaagtgtttatcatataagtgcttatctataagctatttctatatcaaaagatataataaattcaa 11410115  T
Q  287 att-gttttcata 298  Q
    ||| |||||||||    
T  11410114 attcgttttcata 11410102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 219 - 298
Target Start/End: Complemental strand, 28803661 - 28803582
Alignment:
Q  219 cataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    |||||||| |||||||||||||| ||| ||| |||||||||| |    ||||||||||||||||| ||| || |||||||    
T  28803661 cataaatgcttatcatataagtgcttatatataagttatttcgataacaaaagataaaataaagtcaaactgatttcata 28803582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 42457899 - 42457938
Alignment:
Q  255 tatttctagcgtaaaagataaaataaagttaaattgtttt 294  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  42457899 tatttctatagtaaaagataaaataaagttaaattgtttt 42457938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 3227769 - 3227731
Alignment:
Q  266 taaaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  3227769 taaaaaataaaacaaagttaaattgttttcataagctat 3227731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 298
Target Start/End: Original strand, 10150679 - 10150749
Alignment:
Q  228 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    |||| ||||||||| |||  || ||||||||||||   ||||||||||||||| ||||||| |||||||||    
T  10150679 ttattatataagtgtttatgtataagttatttctataataaaagataaaataacgttaaatggttttcata 10150749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 298
Target Start/End: Complemental strand, 31228966 - 31228893
Alignment:
Q  227 tttatcatataagtggttacatacaagttatttcta--gcgtaaaagataaaataaagttaaattgttttcata 298  Q
    |||||||||||||||||||   ||| ||||||||||  ||  ||||||||||||||||  ||||||||||||||    
T  31228966 tttatcatataagtggttatgcacatgttatttctatagctcaaaagataaaataaaggcaaattgttttcata 31228893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 298
Target Start/End: Original strand, 3673728 - 3673801
Alignment:
Q  225 tgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    ||||| ||||||||||| |||  ||  |||||||||||    |||| |||||||||||||||||||||||||||    
T  3673728 tgtttgtcatataagtgcttatgtattagttatttctataacaaaatataaaataaagttaaattgttttcata 3673801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 304
Target Start/End: Original strand, 750460 - 750496
Alignment:
Q  268 aaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  750460 aaagataaaataatgttaaattgtcttcataagctat 750496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 3102576 - 3102672
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 283  Q
    |||||||||||| ||| ||||| | |||| | |||||||||||||||||||| || |||  || ||| ||||| ||  | |||| ||||||||||||    
T  3102576 tttggataaacagctttattaagcgcttaaaacataaatgtttatcatataactgcttatgtataagctatttttatagcaaaatataaaataaagt 3102672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 298
Target Start/End: Complemental strand, 9202935 - 9202824
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcat-ataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 285  Q
    ||||||||||||||||| ||  |  |||||| || || |||||||||| ||||||| ||| ||| ||| |||||||   | |||||||||||||||||||    
T  9202935 tttggataaacatcttatttgca-gcttatagcacaagtgtttatcatgataagtgcttatatataagctatttctgtagcaaaagataaaataaagtta 9202837  T
Q  286 aattgttttcata 298  Q
    |||||||||||||    
T  9202836 aattgttttcata 9202824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 12595847 - 12595816
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcata 298  Q
    ||||||||||||||||||||||||||||||||    
T  12595847 aaaagataaaataaagttaaattgttttcata 12595816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 297
Target Start/End: Original strand, 10363713 - 10363743
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcat 297  Q
    |||||||||||||||||||||||||||||||    
T  10363713 aaaagataaaataaagttaaattgttttcat 10363743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 265 - 295
Target Start/End: Original strand, 12425532 - 12425562
Alignment:
Q  265 gtaaaagataaaataaagttaaattgttttc 295  Q
    |||||||||||||||||||||||||||||||    
T  12425532 gtaaaagataaaataaagttaaattgttttc 12425562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 26516181 - 26516275
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaa 281  Q
    |||||||||||| ||||||||| | |||||| |||||  | |||||||||||||| |||  || ||| ||||||||    |||||||||||||||    
T  26516181 tttggataaacaacttaattaagcgcttatagcataagcgcttatcatataagtgcttatgtataagctatttctaaaacaaaagataaaataaa 26516275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 12242795 - 12242758
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  12242795 aaaagataaaatagagtcaaattgttttcataagctat 12242758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 11835240 - 11835268
Alignment:
Q  267 aaaagataaaataaagttaaattgttttc 295  Q
    |||||||||||||||||||||||||||||    
T  11835240 aaaagataaaataaagttaaattgttttc 11835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 190 - 298
Target Start/End: Complemental strand, 35135846 - 35135738
Alignment:
Q  190 ggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaatt 289  Q
    ||||||||| ||||||| ||| || ||| ||||| || ||| |||||||||| |||  || ||| ||||||||    ||||||||||||||||| ||| |    
T  35135846 ggataaacaacttaattcaacactcatagcataagtgcttaacatataagtgtttatgtataagatatttctataacaaaagataaaataaagtcaaact 35135747  T
Q  290 gttttcata 298  Q
     ||||||||    
T  35135746 attttcata 35135738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 37611364 - 37611263
Alignment:
Q  201 ttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataag 300  Q
    |||||||| | |||||| |||||||| || ||||||||||| |||  || ||| ||||||||   ||||||  ||||| || | ||||||||||||||||    
T  37611364 ttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataataaaag--aaaatcaaatcaaattgttttcataag 37611267  T
Q  301 ctat 304  Q
    ||||    
T  37611266 ctat 37611263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 37788094 - 37787993
Alignment:
Q  201 ttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataag 300  Q
    |||||||| | |||||| |||||||| || ||||||||||| |||  || ||| ||||||||   ||||||  ||||| || | ||||||||||||||||    
T  37788094 ttaattaagcacttatagcataaatggttgtcatataagtgcttatgtaaaagctatttctataataaaag--aaaatcaaatcaaattgttttcataag 37787997  T
Q  301 ctat 304  Q
    ||||    
T  37787996 ctat 37787993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 298
Target Start/End: Original strand, 17269133 - 17269244
Alignment:
Q  186 atttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagtta 285  Q
    |||||||||| || ||| ||||||  || |||||||||| |||| ||||||||||| |||  || |||||||||||||   |||||  |||||||||| |    
T  17269133 atttggataagcaacttgattaaatactgatatcataaacgttt-tcatataagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtca 17269231  T
Q  286 aattgttttcata 298  Q
    |||||||||||||    
T  17269232 aattgttttcata 17269244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 219 - 299
Target Start/End: Original strand, 45234112 - 45234192
Alignment:
Q  219 cataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataa 299  Q
    |||||||||||||||||| |||| ||   |||| ||||||||||   |||||||||||||||||| ||||| |||||||||    
T  45234112 cataaatgtttatcatatgagtgcttttgtacatgttatttctataataaaagataaaataaagtcaaattattttcataa 45234192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 14737812 - 14737775
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  14737812 aaaagataaaataaagtcaaattgttttcataagctat 14737775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 48748690 - 48748653
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  48748690 aaaagatgaaataaagttaaattgttttcataagctat 48748653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 298
Target Start/End: Original strand, 11211060 - 11211112
Alignment:
Q  246 catacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    |||| |||||||||||||   ||||||||||||||||||||||| ||||||||    
T  11211060 catataagttatttctagaacaaaagataaaataaagttaaatttttttcata 11211112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 21516256 - 21516300
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttat 231  Q
    |||||||||||| ||||||||||| |||||| |||||||||||||    
T  21516256 tttggataaacaacttaattaaacgcttataacataaatgtttat 21516300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 15477530 - 15477568
Alignment:
Q  256 atttctagcgtaaaagataaaataaagttaaattgtttt 294  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  15477530 atttctatagtaaaagataaaataaagttaaattgtttt 15477568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 24153164 - 24153214
Alignment:
Q  191 gataaacatcttaattaaacccttatatcataaatgtttatcatataagtg 241  Q
    |||||||| ||||||||||| |||||| |||| ||||||||||||| ||||    
T  24153164 gataaacaacttaattaaacacttataacatatatgtttatcatatgagtg 24153214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 50319255 - 50319292
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||||||||||||| || |||||||||||||||||    
T  50319255 aaaagataaaataaagtcaagttgttttcataagctat 50319292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 37236 - 37280
Alignment:
Q  191 gataaacatcttaattaaacccttatatcataaatgtttatcata 235  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||    
T  37236 gataaacagcttaattaaatgcttataacataaatgtttatcata 37280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 294
Target Start/End: Original strand, 8081849 - 8081877
Alignment:
Q  266 taaaagataaaataaagttaaattgtttt 294  Q
    |||||||||||||||||||||||||||||    
T  8081849 taaaagataaaataaagttaaattgtttt 8081877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 336
Target Start/End: Complemental strand, 17631067 - 17631039
Alignment:
Q  308 aagtgtttatgtcaatagataaactcaaa 336  Q
    |||||||||||||||||||||||||||||    
T  17631067 aagtgtttatgtcaatagataaactcaaa 17631039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 304
Target Start/End: Complemental strand, 29834985 - 29834953
Alignment:
Q  272 ataaaataaagttaaattgttttcataagctat 304  Q
    |||||||||||| ||||||||||||||||||||    
T  29834985 ataaaataaagtcaaattgttttcataagctat 29834953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 36602687 - 36602727
Alignment:
Q  201 ttaattaaacccttatatcataaatgtttatcatataagtg 241  Q
    |||||||| | |||||||||||||| |||||||||||||||    
T  36602687 ttaattaagcacttatatcataaatttttatcatataagtg 36602727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 294
Target Start/End: Complemental strand, 47002982 - 47002954
Alignment:
Q  266 taaaagataaaataaagttaaattgtttt 294  Q
    |||||||||||||||||||||||||||||    
T  47002982 taaaagataaaataaagttaaattgtttt 47002954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 298
Target Start/End: Original strand, 27459 - 27570
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaa 286  Q
    |||||||||||| ||||| ||||| |||||| |||||    ||||||| |||||| |||  || ||||||||||||    | ||||||||||||||| ||    
T  27459 tttggataaacaacttaaataaacgcttatagcataagctcttatcatgtaagtgcttatgtataagttatttctataacagaagataaaataaagtcaa 27558  T
Q  287 attgttttcata 298  Q
    ||||||||||||    
T  27559 attgttttcata 27570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 21385 - 21357
Alignment:
Q  267 aaaagataaaataaagttaaattgttttc 295  Q
    |||||||||||||||||||||||||||||    
T  21385 aaaagataaaataaagttaaattgttttc 21357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 279
Target Start/End: Complemental strand, 6552456 - 6552365
Alignment:
Q  188 ttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaata 279  Q
    |||||||| || ||||||||||| |||| ||||||| |  |||||||||||||| |||  |||||||||||||||    |||||||||||||    
T  6552456 ttggataagcaacttaattaaacacttaaatcataagtacttatcatataagtgcttatgtacaagttatttctacaacaaaagataaaata 6552365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 21853256 - 21853197
Alignment:
Q  234 tataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttt 293  Q
    |||||||| ||| ||| ||||||||||||    |||||||||||||||||||||||||||    
T  21853256 tataagtgattatatataagttatttctattacaaaagataaaataaagttaaattgttt 21853197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 5630102 - 5630049
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagt 240  Q
    |||||||||||| |||||||||  |||||||  |||| ||||||||||||||||    
T  5630102 tttggataaacaacttaattaagtccttatagaataagtgtttatcatataagt 5630049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 7244625 - 7244702
Alignment:
Q  227 tttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||||||||||| |||  || ||| ||||||||    ||||||||||| ||||| ||| ||||||||||||||||    
T  7244625 tttatcatataagtgcttatgtataagctatttctatatcaaaagataaaagaaagtcaaactgttttcataagctat 7244702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 34035902 - 34035939
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcataagctat 304  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  34035902 aaaaaataatataaagttaaattgttttcataagctat 34035939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 8680878 - 8680926
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcata 235  Q
    |||||||||||| || |||||||| |||||| |||| ||||||||||||    
T  8680878 tttggataaacagctcaattaaacacttatagcatagatgtttatcata 8680926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 30180014 - 30180042
Alignment:
Q  267 aaaagataaaataaagttaaattgttttc 295  Q
    |||||||||||||||||||||||||||||    
T  30180014 aaaagataaaataaagttaaattgttttc 30180042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 33601215 - 33601163
Alignment:
Q  252 agttatttctagcgtaaaagataaaataaagttaaattgttttcataagctat 304  Q
    |||||||||||   ||||| |||||||||||| ||| ||||||||||||||||    
T  33601215 agttatttctacactaaaaaataaaataaagtcaaactgttttcataagctat 33601163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 10728579 - 10728626
Alignment:
Q  251 aagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    ||||||||||||  | ||||||||||||||||||||||||||||||||    
T  10728579 aagttatttctaaagcaaaagataaaataaagttaaattgttttcata 10728626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Complemental strand, 10749389 - 10749304
Alignment:
Q  212 cttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    ||||||||||||  ||||||||||||||  ||||  || |||| |||||||   |||||||||||||||||||||||| ||||||||    
T  10749389 cttatatcataagcgtttatcatataagatgttatgtataagt-atttctataataaaagataaaataaagttaaattattttcata 10749304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 5328857 - 5328953
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 283  Q
    |||| ||||||| ||||||||| | | |||| |||||||| |||||||| ||||| |||| |  ||||||||||||    |||||||||||||||||    
T  5328857 tttgaataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagt 5328953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 6078475 - 6078364
Alignment:
Q  188 ttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaa 287  Q
    ||||||||||| ||||||||| |  ||||| |||||  | |||||||| | |||||||| ||  || |||||||| |  | ||| ||||||||||| |||    
T  6078475 ttggataaacaacttaattaagcggttataacataagcgcttatcatacatgtggttacgtatgagctatttctatcacagaaggtaaaataaagtcaaa 6078376  T
Q  288 ttgttttcataa 299  Q
    ||||||||||||    
T  6078375 ttgttttcataa 6078364  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Complemental strand, 2205675 - 2205638
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcataagctat 304  Q
    ||||||||||| ||||| ||||||||||||||||||||    
T  2205675 aaaagataaaacaaagtcaaattgttttcataagctat 2205638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 5731555 - 5731592
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcataagctat 304  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  5731555 aaaagataaaatgaagtcaaattgttttcataagctat 5731592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 264302 - 264362
Alignment:
Q  235 ataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttc 295  Q
    ||||||| ||| ||| ||| ||||||||  | |||||||||||||||||||||| ||||||    
T  264302 ataagtgcttatatataagctatttctaaagcaaaagataaaataaagttaaatcgttttc 264362  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 295
Target Start/End: Complemental strand, 9093663 - 9093635
Alignment:
Q  267 aaaagataaaataaagttaaattgttttc 295  Q
    |||||||||||||||||||||||||||||    
T  9093663 aaaagataaaataaagttaaattgttttc 9093635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 9559664 - 9559620
Alignment:
Q  251 aagttatttctagcgtaaaagataaaataaagttaaattgttttc 295  Q
    ||||||||||||  | ||||||||||||||| |||||||||||||    
T  9559664 aagttatttctatagcaaaagataaaataaatttaaattgttttc 9559620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 363
Target Start/End: Complemental strand, 25487521 - 25487465
Alignment:
Q  307 caagtgtttatgtcaatagataaactcaaatgagttaatcaaaataggcctatagtg 363  Q
    |||||| |||||  ||||||||||||||||| |||||||||||||| | ||||||||    
T  25487521 caagtgcttatgctaatagataaactcaaataagttaatcaaaatatggctatagtg 25487465  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 4684296 - 4684243
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagt 240  Q
    |||||||||| | ||||||||| | ||| |||||||| ||||||||||||||||    
T  4684296 tttggataaatagcttaattaagcacttctatcataagtgtttatcatataagt 4684243  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 296
Target Start/End: Original strand, 49803158 - 49803203
Alignment:
Q  251 aagttatttctagcgtaaaagataaaataaagttaaattgttttca 296  Q
    ||||||||||||  | |||||||||||| |||||||||||||||||    
T  49803158 aagttatttctatagcaaaagataaaatgaagttaaattgttttca 49803203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 295
Target Start/End: Original strand, 25885822 - 25885850
Alignment:
Q  267 aaaagataaaataaagttaaattgttttc 295  Q
    |||||||||||||||||||||||||||||    
T  25885822 aaaagataaaataaagttaaattgttttc 25885850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 298
Target Start/End: Original strand, 30024622 - 30024694
Alignment:
Q  226 gtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    |||||||||||||||  |||   | ||||||||||||    ||||||||||||||||| ||||||||||||||    
T  30024622 gtttatcatataagtacttatgcataagttatttctataacaaaagataaaataaagtaaaattgttttcata 30024694  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 303
Target Start/End: Original strand, 43505919 - 43505955
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcataagcta 303  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  43505919 aaaagataaaataacgttaaattgtttttataagcta 43505955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 304
Target Start/End: Complemental strand, 52294072 - 52294036
Alignment:
Q  268 aaagataaaataaagttaaattgttttcataagctat 304  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  52294072 aaagataaaataaagtgaaattgttttcataaactat 52294036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 283
Target Start/End: Original strand, 54775011 - 54775107
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 283  Q
    |||| ||||||| ||||||||| | | |||| |||||||| |||||||| ||||| |||| |  ||||||||||||    |||||||||||||||||    
T  54775011 tttgaataaacagcttaattaaccacatatagcataaatgattatcataaaagtgcttacgtttaagttatttctataacaaaagataaaataaagt 54775107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 849609 - 849652
Alignment:
Q  251 aagttatttctagcgtaaaagataaaataaagttaaattgtttt 294  Q
    |||| ||||||| || ||||||||||||||||||||||||||||    
T  849609 aagtcatttctatcggaaaagataaaataaagttaaattgtttt 849652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 10101583 - 10101552
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcata 298  Q
    ||||||||||||||||||||||||||||||||    
T  10101583 aaaagataaaataaagttaaattgttttcata 10101552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 10212508 - 10212477
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcata 298  Q
    ||||||||||||||||||||||||||||||||    
T  10212508 aaaagataaaataaagttaaattgttttcata 10212477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 15304454 - 15304423
Alignment:
Q  267 aaaagataaaataaagttaaattgttttcata 298  Q
    ||||||||||||||||||||||||||||||||    
T  15304454 aaaagataaaataaagttaaattgttttcata 15304423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 298
Target Start/End: Complemental strand, 3182508 - 3182438
Alignment:
Q  228 ttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagttaaattgttttcata 298  Q
    ||||||| |||||| |||  || |||||| |||||  | ||||||||||||||||| ||||||||||||||    
T  3182508 ttatcatttaagtgtttatgtataagttacttctatagaaaaagataaaataaagtcaaattgttttcata 3182438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 20874487 - 20874433
Alignment:
Q  187 tttggataaacatcttaattaaacccttatatcataaatgtttatcatataagtg 241  Q
    |||||||||||| ||||||||| | |||||| ||||||||  |||||||||||||    
T  20874487 tttggataaacaacttaattaagcacttatagcataaatgcatatcatataagtg 20874433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 281
Target Start/End: Complemental strand, 16790249 - 16790181
Alignment:
Q  213 ttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaa 281  Q
    ||||| |||||  |||||||||||||||| ||| ||| ||||||||||||    |||||||||||||||    
T  16790249 ttatagcataagcgtttatcatataagtgcttatatataagttatttctataacaaaagataaaataaa 16790181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 283
Target Start/End: Complemental strand, 1259 - 1165
Alignment:
Q  189 tggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 283  Q
    |||||||||| |||||||||   |||||| |||||| || ||||||||||||| |||  || ||| ||||||||    |||||||||||||||||    
T  1259 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagt 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 283
Target Start/End: Original strand, 2716 - 2810
Alignment:
Q  189 tggataaacatcttaattaaacccttatatcataaatgtttatcatataagtggttacatacaagttatttctagcgtaaaagataaaataaagt 283  Q
    |||||||||| |||||||||   |||||| |||||| || ||||||||||||| |||  || ||| ||||||||    |||||||||||||||||    
T  2716 tggataaacaacttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaataaagt 2810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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