View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7397_low_1 (Length: 521)
Name: NF7397_low_1
Description: NF7397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7397_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 19 - 505
Target Start/End: Original strand, 42928244 - 42928712
Alignment:
| Q |
19 |
cttcggagttgaaacacgctcccatgacatccagtgaattcctttagaatttgtggcatcatgaccccaccaaaatgaattaagcatcttctctatttca |
118 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
42928244 |
cttcggagttgaaagacgctcccatgacatccagtgaattcctttagaatttgtggcattatgac------------------gcatcttctctatttca |
42928325 |
T |
|
| Q |
119 |
tgtaagcactttaatatctctttatttgttatggattgtttgtttaggtgtcagtcttcatttcttgttgaaggcttccacaactttgttgagctaagaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42928326 |
tgtaagcactttaatatctctttatttgttatggattgtttgtttaggtatcagtcttcatttcttgttgaaggctgccacaactttgttgagctaagaa |
42928425 |
T |
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| Q |
219 |
gacaggcaagtcattttctaccttgcactgccattttgagattttctactattgtattagaacatcaaaattacctagttctataattggtacattgtta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
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| T |
42928426 |
gacaggcaagtcattttctaccttgcactgccattttgagattttctactattgtattagaacatcaaaattacctggttctataatgggtacattgtta |
42928525 |
T |
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| Q |
319 |
atgtatagaaatgaaattgtagttctaattatagctatgatgtccaattttttacagaaagttttgtagctaannnnnnnnactcaatgttttggagcta |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42928526 |
atgtatagaaatgaaattgtagttctaattatagctatgatgtccaattttttacagaaagttttgtagctaatttttcttactcaatgttttggagcta |
42928625 |
T |
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| Q |
419 |
atgaacagactgtatatcatnnnnnnnnttaacgacctgtattatatatgcttgaatataataagataaatatacatcacagttcat |
505 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42928626 |
atgaacagactgtatgtcataaaaaaaattaacgacctgtattatatatgcttgaatataataagataaatatacatcacagttcat |
42928712 |
T |
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