View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7397_low_2 (Length: 458)

Name: NF7397_low_2
Description: NF7397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7397_low_2
NF7397_low_2
[»] chr8 (4 HSPs)
chr8 (222-449)||(21993807-21994034)
chr8 (222-446)||(31997143-31997367)
chr8 (67-185)||(31996986-31997104)
chr8 (67-185)||(21993650-21993768)
[»] chr4 (10 HSPs)
chr4 (67-449)||(5298817-5299198)
chr4 (67-449)||(27686478-27686859)
chr4 (222-449)||(21849724-21849956)
chr4 (222-449)||(21905587-21905819)
chr4 (222-449)||(17833792-17834024)
chr4 (222-393)||(3493321-3493492)
chr4 (69-185)||(3493166-3493282)
chr4 (67-185)||(17833635-17833753)
chr4 (67-185)||(21849995-21850113)
chr4 (67-185)||(21905858-21905976)
[»] scaffold0058 (2 HSPs)
scaffold0058 (222-449)||(50526-50753)
scaffold0058 (67-185)||(50369-50487)
[»] chr5 (6 HSPs)
chr5 (222-449)||(30949295-30949527)
chr5 (222-449)||(21756972-21757204)
chr5 (222-449)||(18215307-18215540)
chr5 (67-185)||(18215150-18215268)
chr5 (67-185)||(21757243-21757361)
chr5 (67-185)||(30949138-30949256)
[»] chr3 (4 HSPs)
chr3 (222-449)||(4374977-4375209)
chr3 (67-185)||(13118101-13118219)
chr3 (67-185)||(4375248-4375366)
chr3 (222-296)||(13118258-13118332)
[»] chr2 (4 HSPs)
chr2 (67-449)||(4461814-4462197)
chr2 (222-449)||(5343024-5343256)
chr2 (67-185)||(5342867-5342985)
chr2 (67-144)||(10887465-10887542)
[»] chr1 (3 HSPs)
chr1 (67-449)||(41204509-41204892)
chr1 (222-393)||(20324689-20324860)
chr1 (67-185)||(20324532-20324650)
[»] chr7 (2 HSPs)
chr7 (235-443)||(12706892-12707100)
chr7 (67-141)||(12700773-12700847)
[»] scaffold1982 (1 HSPs)
scaffold1982 (222-393)||(46-217)
[»] scaffold0303 (1 HSPs)
scaffold0303 (307-451)||(3424-3568)
[»] scaffold0335 (1 HSPs)
scaffold0335 (408-449)||(18794-18835)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 6e-78; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 222 - 449
Target Start/End: Original strand, 21993807 - 21994034
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcact 321  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||    
T  21993807 atatatgcacatattagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccctcact 21993906  T
Q  322 ttgagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaagtagt 421  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| ||| | | |||||||||| | |    
T  21993907 ttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaccttctgaagcaat 21994006  T
Q  422 ttaatcatcagtagctttctcttcttct 449  Q
    ||||||||||||||||||||||||||||    
T  21994007 ttaatcatcagtagctttctcttcttct 21994034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 222 - 446
Target Start/End: Original strand, 31997143 - 31997367
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcact 321  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| | |||    
T  31997143 atatatgcacatattagacatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatcccttact 31997242  T
Q  322 ttgagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaagtagt 421  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||| ||||  ||| ||| | | |||||||||| | |    
T  31997243 ttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtctaagcatcaataagaaaaaccttctgaagcaat 31997342  T
Q  422 ttaatcatcagtagctttctcttct 446  Q
    |||||||||||||||||||||||||    
T  31997343 ttaatcatcagtagctttctcttct 31997367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 31996986 - 31997104
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||  |||||||||| ||||||  |    
T  31996986 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcaatcatcaattatgacgtgtgcagttgtaaatgagtataataccatca 31997085  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||||| ||||||||||    
T  31997086 tgaaagaagtatgaacaaa 31997104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 21993650 - 21993768
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||  |||||||||| ||||||  |    
T  21993650 aatgcacccttaatatatcttgttaaagcataagacatcatacaatgatttcaatcatcaattatgacgtgtgcagttgtaaatgagtataataccatca 21993749  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  21993750 tgaaaggagtatgaacaaa 21993768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 67 - 449
Target Start/End: Original strand, 5298817 - 5299198
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  5298817 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 5298916  T
Q  167 tgaaagaaatatgaacaaattaaagagtgnnnnnnnttattgccttttaaggttaat-atatgcacatgttagatatgacagaatttgatgcattcaatc 265  Q
    |||||| | |||||||||| || | |          |||||  | |||||| | ||  || || | || ||||| |||||||||||||||||||||||||    
T  5298917 tgaaaggagtatgaacaaagtataaa------acacttatttgcatttaagttcaaacatttg-atatattagacatgacagaatttgatgcattcaatc 5299009  T
Q  266 at----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcacttt-gagattcaaagaagagagcatgtttctcttcctttga 360  Q
    ||    ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  5299010 atatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccctcacttttgagattcaatgaagagagcatgtttctctttctttga 5299109  T
Q  361 aatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaagtagtttaatcatcagtagctttctcttcttct 449  Q
    ||| ||||||| ||||||   ||| ||||||||  ||| ||| | | |||||||||| | |||||||||||||||||||||||||||||    
T  5299110 aatactttctcgtctggatggagaggtccaagcatcaataagaaaaaccttctgaagcaatttaatcatcagtagctttctcttcttct 5299198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 67 - 449
Target Start/End: Original strand, 27686478 - 27686859
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  27686478 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 27686577  T
Q  167 tgaaagaaatatgaacaaattaaagagtgnnnnnnnttattgccttttaaggttaat-atatgcacatgttagatatgacagaatttgatgcattcaatc 265  Q
    |||||| | |||||||||| || | |          |||||  | |||||| | ||  || || | || ||||| |||||||||||||||||||||||||    
T  27686578 tgaaaggagtatgaacaaagtataaa------acacttatttgcatttaagttcaaacatttg-atatattagacatgacagaatttgatgcattcaatc 27686670  T
Q  266 at----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcacttt-gagattcaaagaagagagcatgtttctcttcctttga 360  Q
    ||    ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  27686671 atatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccctcacttttgagattcaatgaagagagcatgtttctctttctttga 27686770  T
Q  361 aatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaagtagtttaatcatcagtagctttctcttcttct 449  Q
    ||| ||||||| ||||||   ||| ||||||||  ||| ||| | | |||||||||| | |||||||||||||||||||||||||||||    
T  27686771 aatactttctcgtctggatggagaggtccaagcatcaataagaaaaaccttctgaagcaatttaatcatcagtagctttctcttcttct 27686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 222 - 449
Target Start/End: Complemental strand, 21849956 - 21849724
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcat----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccat 317  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   ||||||||| |    
T  21849956 atatatgcacatattagacatgacagaatttgatgcattcaatcatatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccct 21849857  T
Q  318 cacttt-gagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaa 416  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| ||| | | |||||||||    
T  21849856 cacttttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaccttctgaa 21849757  T
Q  417 gtagtttaatcatcagtagctttctcttcttct 449  Q
    | | |||||||||||||||||||||||||||||    
T  21849756 gcaatttaatcatcagtagctttctcttcttct 21849724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 222 - 449
Target Start/End: Complemental strand, 21905819 - 21905587
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcat----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccat 317  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   ||||||||| |    
T  21905819 atatatgcacatattagacatgacagaatttgatgcattcaatcatatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccct 21905720  T
Q  318 cacttt-gagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaa 416  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| ||| | | |||||||||    
T  21905719 cacttttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaccttctgaa 21905620  T
Q  417 gtagtttaatcatcagtagctttctcttcttct 449  Q
    | | |||||||||||||||||||||||||||||    
T  21905619 gcaatttaatcatcagtagctttctcttcttct 21905587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 222 - 449
Target Start/End: Original strand, 17833792 - 17834024
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcat----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccat 317  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   || |||||| |    
T  17833792 atatatgcacatattagacatgacagaatttgatgcattcaatcatatatcatatttattatagtgcaaataaatgtgtaccttatgcgataatatccct 17833891  T
Q  318 cacttt-gagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaa 416  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| ||| | | |||||||||    
T  17833892 cacttttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaccttctgaa 17833991  T
Q  417 gtagtttaatcatcagtagctttctcttcttct 449  Q
    | | |||||||||||||||||||||||||||||    
T  17833992 gcaatttaatcatcagtagctttctcttcttct 17834024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 222 - 393
Target Start/End: Original strand, 3493321 - 3493492
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcact 321  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||| |||||    
T  3493321 atatatgcacatattaaacatgacagaatttgatgcattcaatcatcatatttattatagcgcaaataaatgtgtaccttatgcgatgatatccctcact 3493420  T
Q  322 ttgagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagc 393  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||| ||| ||   ||||||||||||    
T  3493421 ttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctagatggagaagtccaagc 3493492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 69 - 185
Target Start/End: Original strand, 3493166 - 3493282
Alignment:
Q  69 tgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaatg 168  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||  |||||||||| ||||||  |||    
T  3493166 tgcacccttaatatatcttgttaaagcataagacatcatacaatgatttcaatcatcaattatgacgtgtgcagttgtaaatgagtataataccatcatg 3493265  T
Q  169 aaagaaatatgaacaaa 185  Q
    |||| | ||||||||||    
T  3493266 aaaggagtatgaacaaa 3493282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 17833635 - 17833753
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  17833635 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 17833734  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  17833735 tgaaaggagtatgaacaaa 17833753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 21850113 - 21849995
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  21850113 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 21850014  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  21850013 tgaaaggagtatgaacaaa 21849995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 21905976 - 21905858
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  21905976 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 21905877  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  21905876 tgaaaggagtatgaacaaa 21905858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 222 - 449
Target Start/End: Original strand, 50526 - 50753
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcact 321  Q
    |||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| | |||    
T  50526 atatatgcacatattaaacatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatgtgatgatatccctgact 50625  T
Q  322 ttgagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaagtagt 421  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||| | ||||   ||||||||||||  ||| ||| | |  ||||||||| | |    
T  50626 ttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtttggatggagaagtccaagcatcaataagaaaaatcttctgaagcaat 50725  T
Q  422 ttaatcatcagtagctttctcttcttct 449  Q
    ||||||||||||||||||||||||||||    
T  50726 ttaatcatcagtagctttctcttcttct 50753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 50369 - 50487
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||| |||||| ||  |||||||||| ||||||  |    
T  50369 aatgcaccattaatatatcttgttaaagcataagacatcatacaatgatttcaatcattaattatgacgtgtgcaattgtaaatgagtataataccatca 50468  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||  | ||||||||||    
T  50469 tgaaatgagtatgaacaaa 50487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 222 - 449
Target Start/End: Original strand, 30949295 - 30949527
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcat----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccat 317  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   ||||||||| |    
T  30949295 atatatgcacatattagacatgacagaatttgatgcattcaatcatatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccct 30949394  T
Q  318 cacttt-gagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaa 416  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| ||| | | |||||||||    
T  30949395 cacttttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaccttctgaa 30949494  T
Q  417 gtagtttaatcatcagtagctttctcttcttct 449  Q
    | | |||||||||||||||||||||||||||||    
T  30949495 gcaatttaatcatcagtagctttctcttcttct 30949527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 222 - 449
Target Start/End: Complemental strand, 21757204 - 21756972
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcat----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccat 317  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   ||||||||| |    
T  21757204 atatatgcacatattagacatgacataatttgatgcattcaatcatatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccct 21757105  T
Q  318 cacttt-gagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaa 416  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| ||| | | |||||||||    
T  21757104 cacttttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaccttctgaa 21757005  T
Q  417 gtagtttaatcatcagtagctttctcttcttct 449  Q
    | | |||||||||||||||||||||||||||||    
T  21757004 gcaatttaatcatcagtagctttctcttcttct 21756972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 222 - 449
Target Start/End: Original strand, 18215307 - 18215540
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcat----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccat 317  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   ||||||||| |    
T  18215307 atatatgcacatattagacatgacagaatttgatgcattcaatcatatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccct 18215406  T
Q  318 cacttt-gagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaag-catacccttctga 415  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| |||  | | | ||||||    
T  18215407 cacttttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaactttctga 18215506  T
Q  416 agtagtttaatcatcagtagctttctcttcttct 449  Q
    || | |||||||||||||||||||||||||||||    
T  18215507 agcaatttaatcatcagtagctttctcttcttct 18215540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 18215150 - 18215268
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  18215150 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 18215249  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  18215250 tgaaaggagtatgaacaaa 18215268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 21757361 - 21757243
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  21757361 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 21757262  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  21757261 tgaaaggagtatgaacaaa 21757243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 30949138 - 30949256
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  30949138 aatgcacccttaatatatcttgttaaagaataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 30949237  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  30949238 tgaaaggagtatgaacaaa 30949256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 222 - 449
Target Start/End: Complemental strand, 4375209 - 4374977
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcat----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccat 317  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   ||||||||| |    
T  4375209 atatatgcacatattagacatgacataatttgatgcattcaatcatatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccct 4375110  T
Q  318 cacttt-gagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaa 416  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| ||| | | |||||||||    
T  4375109 cacttttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaccttctgaa 4375010  T
Q  417 gtagtttaatcatcagtagctttctcttcttct 449  Q
    | | |||||||||||||||||||||||||||||    
T  4375009 gcaatttaatcatcagtagctttctcttcttct 4374977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 13118101 - 13118219
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| |||||||||  |||||||||| ||||||  |    
T  13118101 aatgcacccttaatatatcttgttaaagcataagacatcatacaatgatttgaatcatcaattatgacgtgtgcagttataaatgagtataataccatca 13118200  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | || |||||||    
T  13118201 tgaaaggagtaagaacaaa 13118219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 185
Target Start/End: Complemental strand, 4375366 - 4375248
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  4375366 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 4375267  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  4375266 tgaaaggagtatgaacaaa 4375248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 13118258 - 13118332
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgt 296  Q
    |||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13118258 atatatgcacatattagacatgacagaatttgacgcattcaatcatcatatttattatagtgcaaataaatgtgt 13118332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 67 - 449
Target Start/End: Complemental strand, 4462197 - 4461814
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  4462197 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 4462098  T
Q  167 tgaaagaaatatgaacaaattaaagagtgnnnnnnnttattgccttttaaggttaat-atatgcacatgttagatatgacagaatttgatgcattcaatc 265  Q
    |||||| | |||||||||| || | |          |||||  | |||||| | ||  || || | || ||||| |||||||||||||||||||||||||    
T  4462097 tgaaaggagtatgaacaaagtataaa------acacttatttgcatttaagttcaaacatttg-atatattagacatgacagaatttgatgcattcaatc 4462005  T
Q  266 at----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcacttt-gagattcaaagaagagagcatgtttctcttcctttga 360  Q
    ||    ||||||||||||||||||||||||||||||||||||   ||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||    
T  4462004 atatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccctcacttttgagattcaatgaagagagcatgtttctctttctttga 4461905  T
Q  361 aatgctttctcatctggacaaagaagtccaagccacaacaag--catacccttctgaagtagtttaatcatcagtagctttctcttcttct 449  Q
    ||| ||||||| ||||||   ||| ||||||||  ||| |||   | | |||||||||| | |||||||||||||||||||||||||||||    
T  4461904 aatactttctcgtctggatggagaggtccaagcatcaataagaaaaaaaccttctgaagcaatttaatcatcagtagctttctcttcttct 4461814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 222 - 449
Target Start/End: Original strand, 5343024 - 5343256
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcat----catatttattatagtgcaaataaatgtgtaccttatagaatgatatccat 317  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   ||||||||| |    
T  5343024 atatatgcacatattagacatgacataatttgatgcattcaatcatatatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccct 5343123  T
Q  318 cacttt-gagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaa 416  Q
    |||||| ||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||   ||||||||||||  ||| ||| | | |||||||||    
T  5343124 cacttttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcgtctggatggagaagtccaagcatcaataagaaaaaccttctgaa 5343223  T
Q  417 gtagtttaatcatcagtagctttctcttcttct 449  Q
    | | |||||||||||||||||||||||||||||    
T  5343224 gcaatttaatcatcagtagctttctcttcttct 5343256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 5342867 - 5342985
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| ||||  |||||||||  |||||||||| ||||||  |    
T  5342867 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgatttcagtcattaattatgatgtgtgcagttgtaaatgagtataataccatca 5342966  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  5342967 tgaaaggagtatgaacaaa 5342985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 10887465 - 10887542
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtt 144  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| || ||| || |||||  |||||||||| ||||    
T  10887465 aatgcacccttaatatatcttgttaaagcataagacaacatgcaacgactttgattatcaaatatgacttgtgtagtt 10887542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 67 - 449
Target Start/End: Complemental strand, 41204892 - 41204509
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    ||||||||||||| ||||||||||||| ||||||||||| ||||||||||| |||||||||  ||||| ||||||||| ||||| ||||| | ||||  |    
T  41204892 aatgcacccttaacatatcttgttaaaacataagacatcttgcaatgatttcaatcatcaaatatgacgtgtgcagttgcaaataagtataacaccatca 41204793  T
Q  167 tgaaagaaatatgaacaaattaaagagtgnnnnnnnttattgccttttaaggttaa--------tatatgcacatgttagatatgacagaatttgatgca 258  Q
    |||||| | |||||||||     || |||       ||||||| ||| ||| ||||        ||||||||||| ||||| |||||| |||||||||||    
T  41204792 tgaaaggagtatgaacaa-----agtgtgaaacaa-ttattgcattt-aagtttaaacatatgatatatgcacatattagacatgacaaaatttgatgca 41204700  T
Q  259 ttcaatcatcatatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcactttgagattcaaagaagagagcatgtttctcttccttt 358  Q
     ||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||||||||||||| ||||| ||| |||||||||| || |    
T  41204699 ctcaatcatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccctcactttgagattcaatgaagatagcgtgtttctctttctct 41204600  T
Q  359 gaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaagtagtttaatcatcagtagctttctcttcttct 449  Q
     || | ||||||||| ||||   |||| |||||||  ||| |||| || |||||||||| ||||||||||||| ||| |||||||||||||    
T  41204599 aaagtactttctcatttggatggagaattccaagcatcaataagcttaaccttctgaagcagtttaatcatcattagttttctcttcttct 41204509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 222 - 393
Target Start/End: Original strand, 20324689 - 20324860
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcact 321  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| |||||    
T  20324689 atatatgcacatattagacatgacaaaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatgcgatgatatccctcact 20324788  T
Q  322 ttgagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagc 393  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||   ||||||||||||    
T  20324789 ttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcatctagatggagaagtccaagc 20324860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 67 - 185
Target Start/End: Original strand, 20324532 - 20324650
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgcagtttcaaatgagtatcataccacaa 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| |||||||||  |||||||||| ||||||  |    
T  20324532 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgaattcaatcatcaattatgacatgtgcagttgtaaatgagtataataccatca 20324631  T
Q  167 tgaaagaaatatgaacaaa 185  Q
    |||||| | ||||||||||    
T  20324632 tgaaaggagtatgaacaaa 20324650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 235 - 443
Target Start/End: Original strand, 12706892 - 12707100
Alignment:
Q  235 ttagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcactttgagattcaaag 334  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||| |    
T  12706892 ttagacatgacaaaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatgggatgatatccctcactttgagattcaatg 12706991  T
Q  335 aagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcatacccttctgaagtagtttaatcatcagta 434  Q
    |||||||||||||||  || |||| |||| ||||||||| || |   ||||||||||||  ||  ||||||| |||||| ||| || |||||||||||||    
T  12706992 aagagagcatgtttccttttctttaaaatactttctcatatgaatggagaagtccaagcatcagtaagcataaccttctaaagcagcttaatcatcagta 12707091  T
Q  435 gctttctct 443  Q
    |||||||||    
T  12707092 gctttctct 12707100  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 141
Target Start/End: Original strand, 12700773 - 12700847
Alignment:
Q  67 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcatcaatcatgacttgtgca 141  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  12700773 aatgcacccttaatatatcttgttaaagcataagacatcatgcaatgattttaatcattaattatgacttgtgca 12700847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1982 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold1982
Description:

Target: scaffold1982; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 222 - 393
Target Start/End: Original strand, 46 - 217
Alignment:
Q  222 atatatgcacatgttagatatgacagaatttgatgcattcaatcatcatatttattatagtgcaaataaatgtgtaccttatagaatgatatccatcact 321  Q
    |||||||||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||| |||||    
T  46 atatatgcacatattagacatgacaaaatttgatgcattcaatcatcatattcattatagtgcaaataaatgtgtaccttatgcgatgatatccctcact 145  T
Q  322 ttgagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagc 393  Q
    ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| ||   ||||||||||||    
T  146 ttgagattcaatgaagagagcatgtttctctttctttgaaatactttctcatctagatggagaagtccaagc 217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0303 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0303
Description:

Target: scaffold0303; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 307 - 451
Target Start/End: Original strand, 3424 - 3568
Alignment:
Q  307 atgatatccatcactttgagattcaaagaagagagcatgtttctcttcctttgaaatgctttctcatctggacaaagaagtccaagccacaacaagcata 406  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||||||||||| |||| ||||||||| ||||   |||||||||||| |||| |||||||    
T  3424 atgatatcgatcactttgagattcgatgaagagaacatgtttctcttcctttaaaatactttctcatatggatggagaagtccaagcaacaataagcata 3523  T
Q  407 cccttctgaagtagtttaatcatcagtagctttctcttcttctca 451  Q
     |||| | ||| ||||||||||| |||||||||||||||||||||    
T  3524 accttataaagcagtttaatcattagtagctttctcttcttctca 3568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 18794 - 18835
Alignment:
Q  408 ccttctgaagtagtttaatcatcagtagctttctcttcttct 449  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  18794 ccttctgaagcaatttaatcatcagtagctttctcttcttct 18835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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