View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7397_low_3 (Length: 424)

Name: NF7397_low_3
Description: NF7397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7397_low_3
NF7397_low_3
[»] chr5 (4 HSPs)
chr5 (84-411)||(7392593-7392920)
chr5 (160-367)||(13954871-13955078)
chr5 (253-312)||(29685506-29685566)
chr5 (255-312)||(12566647-12566704)
[»] chr8 (1 HSPs)
chr8 (155-362)||(10248998-10249205)
[»] chr1 (8 HSPs)
chr1 (205-367)||(7856985-7857147)
chr1 (249-317)||(16146873-16146941)
chr1 (249-322)||(24658285-24658358)
chr1 (256-317)||(52277939-52278000)
chr1 (171-284)||(34774648-34774761)
chr1 (275-322)||(46815065-46815112)
chr1 (253-312)||(4391311-4391371)
chr1 (255-317)||(8327249-8327311)
[»] chr2 (4 HSPs)
chr2 (204-312)||(14107050-14107158)
chr2 (231-312)||(37771319-37771400)
chr2 (244-367)||(7873622-7873744)
chr2 (253-312)||(42049044-42049104)
[»] scaffold0063 (1 HSPs)
scaffold0063 (233-363)||(57453-57583)
[»] scaffold0050 (1 HSPs)
scaffold0050 (231-322)||(36173-36264)
[»] chr6 (1 HSPs)
chr6 (155-311)||(20702453-20702607)
[»] chr4 (4 HSPs)
chr4 (243-363)||(38640089-38640209)
chr4 (255-322)||(53814155-53814222)
chr4 (253-312)||(1798854-1798914)
chr4 (253-312)||(10388271-10388331)
[»] chr3 (5 HSPs)
chr3 (233-317)||(14193424-14193508)
chr3 (251-310)||(40024152-40024211)
chr3 (231-317)||(25647167-25647253)
chr3 (233-307)||(37122807-37122881)
chr3 (249-322)||(47235048-47235122)
[»] chr7 (3 HSPs)
chr7 (249-312)||(3477752-3477815)
chr7 (251-310)||(34389397-34389456)
chr7 (258-322)||(42533940-42534004)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 84 - 411
Target Start/End: Complemental strand, 7392920 - 7392593
Alignment:
Q  84 cgtttccggcggcggaagttgggtatgttgttggtgggtggtccggttagagtgagtgttggtagtgacggggtgatggtgacgaatgtgtggtgtgaag 183  Q
    ||||||||||||||||||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||     
T  7392920 cgtttccggcggcggaagttgggtcggctgttggtgggtggtccggttggagtgagtgttggtagtgacggggtggtggtgacgaatgtgtggtgtgaat 7392821  T
Q  184 ggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactccc 283  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7392820 ggggtgaattgtggagccgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactccc 7392721  T
Q  284 ggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgcttgttttggtcccacgacgtcactat 383  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||| |    
T  7392720 ggatcgtttgtcgtcgtaaggatcgtggtggttagggtttgtttacactggtggccatgggcttcagattttgcttgttttggtcccatgacgtcactgt 7392621  T
Q  384 gtgttccttatttttactattctgatgt 411  Q
    |||||||||||||||||||||| |||||    
T  7392620 gtgttccttatttttactattccgatgt 7392593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 160 - 367
Target Start/End: Complemental strand, 13955078 - 13954871
Alignment:
Q  160 tggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacga 259  Q
    |||||||| | |||| ||||| |||||||||  | |||  ||| |||||||  || ||||||||||| |  |||||||| || ||||| |||||||||||    
T  13955078 tggtgacggacgtgtcgtgtggagggggtgatgtatggtttcgataggtgttatctgtttccggtggctacaggtgtggcggcatctctttcattcacga 13954979  T
Q  260 ttaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgctt 359  Q
    |||||||||| ||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||| ||| ||| || | |||||||||||||||||||    
T  13954978 ttaatcctccttcaacaaactcccgaatcgtttgtcgttgtaaggatcgtggtggttggggtttgttcacgacggtggtcgtgggcttcagattttgctt 13954879  T
Q  360 gttttggt 367  Q
    | ||||||    
T  13954878 gatttggt 13954871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 29685506 - 29685566
Alignment:
Q  253 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 312  Q
    ||||||||||||||||| ||  || |||||||| |||||| ||||||||||||||||||||    
T  29685506 ttcacgattaatcctccttcttcgcaactcccgaatcgttcgtcgtcgtaaggatcgtggt 29685566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 12566647 - 12566704
Alignment:
Q  255 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 312  Q
    ||||||||||||||| || |||  ||||||||||||| |||||| || ||||||||||    
T  12566647 cacgattaatcctccttcgacgctctcccggatcgttcgtcgtcatatggatcgtggt 12566704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 155 - 362
Target Start/End: Complemental strand, 10249205 - 10248998
Alignment:
Q  155 ggtgatggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcatt 254  Q
    |||| |||||||| | |||||||||| |||||||||  ||||| | || |||||||| |||||||||| ||  |  || ||||| || ||||| ||||||    
T  10249205 ggtggtggtgacggacgtgtggtgtggagggggtgatgtgtggtgccgataggtgtggtccgtttccgatgactacagttgtggcggcatctctttcatt 10249106  T
Q  255 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgggcttcagattt 354  Q
    ||||||||||||||| |||||||||||||  |||||||||  |||||||||||||||| |||||||||||||  | |||| ||   ||||||||||||||    
T  10249105 cacgattaatcctccttcaacgaactcccaaatcgtttgtgatcgtaaggatcgtggtggttggggtttgttcgcaccggtggttgtgggcttcagattt 10249006  T
Q  355 tgcttgtt 362  Q
    ||||||||    
T  10249005 tgcttgtt 10248998  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 367
Target Start/End: Original strand, 7856985 - 7857147
Alignment:
Q  205 aggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaagg 304  Q
    ||||||| | ||||||||||||  ||| |||||| || ||||| | |||||| |||||||||||| |||||||||| | |||||||||||||||||||||    
T  7856985 aggtgtggttcgtttccggtggccgtacgtgtggaggcatctcttccattcatgattaatcctccttcaacgaacttctggatcgtttgtcgtcgtaagg 7857084  T
Q  305 atcgtggttgttggggtttgtttacgccggcggccatgggcttcagattttgcttgttttggt 367  Q
    |||||| | |||| ||||||||   | ||| || | ||||||||||||| |||||||||||||    
T  7857085 atcgtgatggttgaggtttgttcgtgtcggtggtcgtgggcttcagattctgcttgttttggt 7857147  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 16146873 - 16146941
Alignment:
Q  249 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 317  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  16146873 ttcatccacgattaatcctccttcaacgaactcccggatcgtttgtcgtcataaggatcgtggtggttg 16146941  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 24658285 - 24658358
Alignment:
Q  249 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 322  Q
    ||||| || |||||||||||| ||||||||||||||||| |||||| ||||||||||||||||| |||| ||||    
T  24658285 ttcatccatgattaatcctccttcaacgaactcccggattgtttgttgtcgtaaggatcgtggtggttgtggtt 24658358  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 256 - 317
Target Start/End: Original strand, 52277939 - 52278000
Alignment:
Q  256 acgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 317  Q
    |||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||| ||||    
T  52277939 acgattaatcctccatcaacgaacttctggatcgtatgtcgtcgtaaggatcgtggtggttg 52278000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 284
Target Start/End: Original strand, 34774648 - 34774761
Alignment:
Q  171 gtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccc 270  Q
    |||||||||| |||||||||   |||| | || |||||||| || ||||||||||| |  |||||||| |  ||||| ||||| |||||||||||||||     
T  34774648 gtgtggtgtggagggggtgataagtggtgccgataggtgtggtctgtttccggtggcttcaggtgtggcgacatctctttcatacacgattaatcctcct 34774747  T
Q  271 tcaacgaactcccg 284  Q
    | ||||||||||||    
T  34774748 ttaacgaactcccg 34774761  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 275 - 322
Target Start/End: Complemental strand, 46815112 - 46815065
Alignment:
Q  275 cgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 322  Q
    |||||||||||||||||||| ||||||||||||||||| |||| ||||    
T  46815112 cgaactcccggatcgtttgttgtcgtaaggatcgtggtggttgtggtt 46815065  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 4391311 - 4391371
Alignment:
Q  253 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 312  Q
    ||||||||||||||||| ||  || |||||| |||||||| ||||||||||||||||||||    
T  4391311 ttcacgattaatcctccttcttcgcaactcctggatcgttcgtcgtcgtaaggatcgtggt 4391371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 8327311 - 8327249
Alignment:
Q  255 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 317  Q
    ||||||||||||||||||| ||  ||||||||||||| ||||||||  |||||| ||| ||||    
T  8327311 cacgattaatcctccctcatcgtgctcccggatcgttcgtcgtcgtttggatcggggtggttg 8327249  T

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Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 204 - 312
Target Start/End: Complemental strand, 14107158 - 14107050
Alignment:
Q  204 taggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaag 303  Q
    |||||||| ||||||||| | || || | ||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  14107158 taggtgtgatccgtttccagcggctgcaagtgtggtggcatctctttcattcacgattaatcttccttcaacgaactcccggatcgtttgtcgtcgtaag 14107059  T
Q  304 gatcgtggt 312  Q
    |||| ||||    
T  14107058 gatcatggt 14107050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 37771400 - 37771319
Alignment:
Q  231 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 312  Q
    ||||||||||| ||||  |||| ||| |||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||    
T  37771400 aggtgtggtggaatctttttcagtcatgattaatcctctttcaacgaactcccggatcgtttgtcgttgtaagaatcgtggt 37771319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 367
Target Start/End: Original strand, 7873622 - 7873744
Alignment:
Q  244 tctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatgg 343  Q
    |||| |||||| |||||||||||| | ||||||||||  ||||| |||||||||| ||||||||||||| |||| || ||||| ||| ||| |||| |||    
T  7873622 tctctttcatttacgattaatccttcttcaacgaactttcggatggtttgtcgtcataaggatcgtggtggttgtgg-ttgttcacg-cggtggccgtgg 7873719  T
Q  344 -gcttcagattttgcttgttttggt 367  Q
     |||| |||||||||||||||||||    
T  7873720 tgctttagattttgcttgttttggt 7873744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 42049104 - 42049044
Alignment:
Q  253 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 312  Q
    ||||||||||||||||| ||  || |||| ||||||||||  |||||||||||||||||||    
T  42049104 ttcacgattaatcctccttcttcgtaacttccggatcgttcctcgtcgtaaggatcgtggt 42049044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 363
Target Start/End: Original strand, 57453 - 57583
Alignment:
Q  233 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgcc 332  Q
    |||||| | |||||| ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||| || |||||  |||     
T  57453 gtgtggcgatatctctttctttcacgattaatcctccttcaacaaactcccggatcgtttgtcgtcgtaaggatcgtggtggttgtgg-ttgttcgcgct 57551  T
Q  333 ggcggccatgg-gcttcagattttgcttgttt 363  Q
    || |||| ||| ||||| ||||||||||||||    
T  57552 ggtggccgtggtgcttcggattttgcttgttt 57583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 36173 - 36264
Alignment:
Q  231 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 322  Q
    |||||||| |||||||| | |||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  36173 aggtgtggcggtatctcttccattcatgattaatcctccttcaacgaactcctggatcgtttgtcgtcgtaaggatcgtggtggttgtggtt 36264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 155 - 311
Target Start/End: Complemental strand, 20702607 - 20702453
Alignment:
Q  155 ggtgatggtgacgaatgtgtggtgtgaagggggtgaattgtggagtcgttaggtgtgttccgtttccggtggttgtaggtgtggtggtatctcgttcatt 254  Q
    |||| |||||||| | |||||||||||||||||  |  ||||| |||| || ||||| |||| |||||   | || ||||||||||| ||||  ||||||    
T  20702607 ggtggtggtgacggacgtgtggtgtgaaggggg--atgtgtggtgtcgatatgtgtgatccggttccgacagctgcaggtgtggtggcatctatttcatt 20702510  T
Q  255 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtgg 311  Q
    || |||||||||||| ||||||||||||||||||||||||  |||||||||||||||    
T  20702509 catgattaatcctccttcaacgaactcccggatcgtttgttatcgtaaggatcgtgg 20702453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 243 - 363
Target Start/End: Complemental strand, 38640209 - 38640089
Alignment:
Q  243 atctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtttgtttacgccggcggccatg 342  Q
    ||||| |||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| || |||||  |||||| || | ||    
T  38640209 atctctttcattcatgattaatcctccttcaacgaactcccgaatcgtttgtcgtcgtaaggatcgtggtggttgtgg-ttgttcgcgccggtgggcctg 38640111  T
Q  343 g-gcttcagattttgcttgttt 363  Q
    | ||||||| ||||||||||||    
T  38640110 gtgcttcagtttttgcttgttt 38640089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 53814222 - 53814155
Alignment:
Q  255 cacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 322  Q
    ||||||| ||||||| |||||| |||| ||||| ||| |||||||||||||||||||| |||| ||||    
T  53814222 cacgattgatcctccttcaacgcactctcggattgttcgtcgtcgtaaggatcgtggtggttgtggtt 53814155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 1798854 - 1798914
Alignment:
Q  253 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 312  Q
    ||||||||||||||||| ||  || ||||||||||||||| ||| ||||||||||||||||    
T  1798854 ttcacgattaatcctccttcttcgcaactcccggatcgttcgtcttcgtaaggatcgtggt 1798914  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 10388271 - 10388331
Alignment:
Q  253 ttcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggt 312  Q
    ||||| ||||||||||| ||  || ||||||||||||||| ||||||||||||||| ||||    
T  10388271 ttcacaattaatcctccttcttcgcaactcccggatcgttcgtcgtcgtaaggatcatggt 10388331  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 233 - 317
Target Start/End: Original strand, 14193424 - 14193508
Alignment:
Q  233 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 317  Q
    ||||||||||||||| | ||||||||||||||| | | |||||||  ||||||||||||||||||||||||||||||||| ||||    
T  14193424 gtgtggtggtatctcttccattcacgattaatcatacttcaacgagatcccggatcgtttgtcgtcgtaaggatcgtggtggttg 14193508  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 310
Target Start/End: Complemental strand, 40024211 - 40024152
Alignment:
Q  251 cattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtg 310  Q
    |||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  40024211 cattcatgattaatcctccttcaacaaactctcggatcgtttgtcgtcgtaaggatcgtg 40024152  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 317
Target Start/End: Original strand, 25647167 - 25647253
Alignment:
Q  231 aggtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttg 317  Q
    |||||||| | |||||| | |||||| |||||||| ||| |||||| |||||||||||||||||| ||||||||| |||||| ||||    
T  25647167 aggtgtggcgatatctcttccattcatgattaatcatccttcaacggactcccggatcgtttgtcatcgtaaggaccgtggtggttg 25647253  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 233 - 307
Target Start/End: Original strand, 37122807 - 37122881
Alignment:
Q  233 gtgtggtggtatctcgttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatc 307  Q
    ||||||||  ||||| |||||||| ||||||||||||   |||||||||||  ||||||||||||||||||||||    
T  37122807 gtgtggtgacatctctttcattcatgattaatcctcctggaacgaactcccatatcgtttgtcgtcgtaaggatc 37122881  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 322
Target Start/End: Original strand, 47235048 - 47235122
Alignment:
Q  249 ttcattcacgattaatcctccctcaacg-aactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 322  Q
    ||||| ||||||||||||||| |||||| ||||| ||| ||||| || || |||||||||||||| |||| ||||    
T  47235048 ttcatccacgattaatcctccttcaacgcaactctcgggtcgttcgttgttgtaaggatcgtggtggttgtggtt 47235122  T

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Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 3477752 - 3477815
Alignment:
Q  249 ttcattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggt 312  Q
    |||||| |||||||||||||| |||||||||||| || ||||||||| ||||||||||||||||    
T  3477752 ttcatttacgattaatcctccttcaacgaactcctggctcgtttgtcatcgtaaggatcgtggt 3477815  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 34389397 - 34389456
Alignment:
Q  251 cattcacgattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtg 310  Q
    |||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||    
T  34389397 cattcatgattaatcctccttcaacaaacttccggatcgtttgtcgtcgtaaggatcgtg 34389456  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 258 - 322
Target Start/End: Complemental strand, 42534004 - 42533940
Alignment:
Q  258 gattaatcctccctcaacgaactcccggatcgtttgtcgtcgtaaggatcgtggttgttggggtt 322  Q
    |||||||||||  |||||||||| ||| ||||||||||||||||||||||||||| |||| ||||    
T  42534004 gattaatcctctttcaacgaacttccgaatcgtttgtcgtcgtaaggatcgtggtggttgtggtt 42533940  T

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