View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7397_low_7 (Length: 232)
Name: NF7397_low_7
Description: NF7397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7397_low_7 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 7639564 - 7639797
Alignment:
| Q |
1 |
ctcctaatctgaaagctcttcattttcatacggtacatcttacatcatgcttcactactattgcattgtgtaccatgttttgaggttaagaaatacta-- |
98 |
Q |
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| T |
7639564 |
ctcctaatctgaaagctcttcattttcacgtggtaaatcttacatcatgcttcactactattgcattgcgtaccatgttttgaggttaagaaatactata |
7639663 |
T |
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| Q |
99 |
atattacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacgactggccattactttcagtgcc |
198 |
Q |
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| T |
7639664 |
atattacttatgtccattgacttgttcattaatttatttttatgtagggatctgtgtcattcatacatcttgaagacgactggccattactttcagtgcc |
7639763 |
T |
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| Q |
199 |
ttgctgtttcaaatattctctcaaatcattttgc |
232 |
Q |
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| T |
7639764 |
ttgctgtttcaaatattctctcaaatcattttgc |
7639797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 103 - 232
Target Start/End: Original strand, 7632953 - 7633080
Alignment:
| Q |
103 |
tacttatgtccattgacttgtttattaatttatttttatgtagggatctgtgtcgttcatacatcttgaagacgactggccattactttcagtgccttgc |
202 |
Q |
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| T |
7632953 |
tactcatgtccattgacttgtttat--atttatttttctgtagcgatttgagtcattcatggatcttgaagacgactggacattactttcagtgccttac |
7633050 |
T |
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| Q |
203 |
tgtttcaaatattctctcaaatcattttgc |
232 |
Q |
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| T |
7633051 |
tgtttcgaatattctctcaaatcattttgc |
7633080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 7632868 - 7632919
Alignment:
| Q |
1 |
ctcctaatctgaaagctcttcattttcatacggtacatcttacatcatgctt |
52 |
Q |
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| T |
7632868 |
ctcctaatctgaaagctcttcatattcatacggtacatcttcaatcatgctt |
7632919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 31217585 - 31217548
Alignment:
| Q |
190 |
ttcagtgccttgctgtttcaaatattctctcaaatcat |
227 |
Q |
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| T |
31217585 |
ttcactgccttgctgtttcaaatcttctctcaaatcat |
31217548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 31267847 - 31267815
Alignment:
| Q |
190 |
ttcagtgccttgctgtttcaaatattctctcaa |
222 |
Q |
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| T |
31267847 |
ttcagtgccttgctgtttcaaatcttctctcaa |
31267815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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