View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7397_low_8 (Length: 225)
Name: NF7397_low_8
Description: NF7397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7397_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 7639787 - 7639980
Alignment:
| Q |
1 |
aatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagt |
100 |
Q |
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| T |
7639787 |
aatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagt |
7639886 |
T |
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| Q |
101 |
gtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
194 |
Q |
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| T |
7639887 |
gtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
7639980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 7633070 - 7633263
Alignment:
| Q |
1 |
aatcattttgcgtttcagattttcgtggacttgaacaacatatccaatttattaattttgttttaaaaaatgccaaagttttagaagagatccggatagt |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7633070 |
aatcattttgcgtttcagattttcttggacttgaacaacatatccaatttattaagtttgttttaaaaaatgccagagttttagaagagatccggatagt |
7633169 |
T |
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| Q |
101 |
gtgttcgagtgatataacaacttatctcgataatatcagaagccagttgcaagctgtatgccccgaaagctgtctcatgacatttcagtagaca |
194 |
Q |
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| T |
7633170 |
gtgttcgagcgacatattaactgatcgagataatatcaaaagccagttggaagctgtagtccccaaaagctgtctcatgacatttctgtagaca |
7633263 |
T |
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