View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7398_high_1 (Length: 898)
Name: NF7398_high_1
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7398_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 109 - 688
Target Start/End: Complemental strand, 41704314 - 41703717
Alignment:
| Q |
109 |
ctagtatctttctgcatcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704314 |
ctagtatctttctgcatcataggtgcattttacacatttgaattttaaaatccgatagggaaaatgttatgaacttgcattttccgcattctaaaatttg |
41704215 |
T |
|
| Q |
209 |
gatgtgtaagatttaattttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaaccaattagtaactactt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | || |
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| T |
41704214 |
gatgtgtaagatttaattttttgttgttcacattatatattgatcttaactagctaaactaacaaacatgaactaatttgtaactaa-tagtaaccaatt |
41704116 |
T |
|
| Q |
309 |
-ttaacaaactctaacaatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacatt |
407 |
Q |
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|||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704115 |
agtaactacttttaacaatatctaatgattctctaattataactaacgttagctcacctcaatgtctagttattggtactcaataaaaaagaatgacatt |
41704016 |
T |
|
| Q |
408 |
acaagaggtggtgtcttcggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgtta---------------------tgtattatagtt |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |
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| T |
41704015 |
acaagaggtggtgtcttcggattgtgtatagtgccaaggtaaacaagaggtggaatatcacttgttatgtattatacaagctaacatctgtattatactt |
41703916 |
T |
|
| Q |
487 |
tcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctaccttgg-- |
584 |
Q |
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| T |
41703915 |
tcaaaactaagaactaacatgagttaattgttcattaaaacctaaaaaaacgtcttagctaacaaggatcctataatgttata-------taccttggat |
41703823 |
T |
|
| Q |
585 |
--ataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcatcga |
682 |
Q |
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| T |
41703822 |
atataatagttcaataatcctgcactgtctgcctacatgtttttcttttttgcaccagaccatattgtaagattatggagaaaaggcaatgaaccatcga |
41703723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 716 - 893
Target Start/End: Complemental strand, 41703722 - 41703545
Alignment:
| Q |
716 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
815 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41703722 |
aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga |
41703623 |
T |
|
| Q |
816 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatgtccatctcatt |
893 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
41703622 |
acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcatt |
41703545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 480 - 793
Target Start/End: Original strand, 41467192 - 41467496
Alignment:
| Q |
480 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtcttagctaacaaggatactataatgttatagtccatctac |
579 |
Q |
| |
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|||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||| | || ||| |
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| T |
41467192 |
tatactttcaaaactaataactaacatgagttaattgttcattaaaacctaacaaaaggtcatggctaacaaggatactataattttatagcctatttac |
41467291 |
T |
|
| Q |
580 |
cttggataatagttcaataatcctgcactgtctgcctacatgnnnnnnnnnnnnacaccagaccatatagtaagattatggagaaaaggcaatgaatcat |
679 |
Q |
| |
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||| ||||||||||| ||||||||||||||| ||||||| || |||||| ||| |||||||||| |||| ||||| ||| |
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| T |
41467292 |
cttagataatagttc---aatcctgcactgtctacctacatctttttcttttttgcatcagaccttattgtaagattatcgaga------catgaaccat |
41467382 |
T |
|
| Q |
680 |
cgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccag |
779 |
Q |
| |
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|| | ||||||||||| |||||||||| | |||| ||||||||||||||||||| |||||||||||||| |||||||||||| |||||| |||| ||| |
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| T |
41467383 |
cggaggaagtagaagtcgaggtttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttgggttgtcag |
41467482 |
T |
|
| Q |
780 |
tgccactgatgaac |
793 |
Q |
| |
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||| ||||||||| |
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| T |
41467483 |
ggcccctgatgaac |
41467496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 41704364 - 41704313
Alignment:
| Q |
18 |
agatagaacaatggatagtgttgtcactggtcaaagggaccgtaaggccgct |
69 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704364 |
agatagaacaatggatagtgttgtcactggtcaaagggaccgtaaggccgct |
41704313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 683 - 770
Target Start/End: Original strand, 41506883 - 41506970
Alignment:
| Q |
683 |
aagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg |
770 |
Q |
| |
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|||||| ||||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||| ||||| ||| ||| |||||| |
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| T |
41506883 |
aagaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg |
41506970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 716 - 778
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
| Q |
716 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
778 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
41513161 |
aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41513223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 669 - 755
Target Start/End: Original strand, 41497620 - 41497706
Alignment:
| Q |
669 |
caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaa |
755 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||| | |||| |||||||||||||||||||| ||| ||| ||||| ||||| |
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| T |
41497620 |
caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgactgtgttaaccgcatttgcaaa |
41497706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 716 - 778
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
| Q |
716 |
aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca |
778 |
Q |
| |
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|||||||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| |
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| T |
41522096 |
aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca |
41522158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 669 - 743
Target Start/End: Original strand, 33077964 - 33078038
Alignment:
| Q |
669 |
caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaac |
743 |
Q |
| |
|
|||| |||||||| | || ||||||||||||||||||| | | || ||||| |||||||||||||| ||||||| |
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| T |
33077964 |
caataaatcatcggaggacgtagaagtggaggtttcactgtcggtgaaagaatattttcttttgactgtgtcaac |
33078038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 480 - 620
Target Start/End: Original strand, 36467105 - 36467243
Alignment:
| Q |
480 |
tatagtttcaaaactaagaactaacatgagttaattgttcattaaaacctaacaaaacgtct-tagctaacaaggatactataatgttatagtccatcta |
578 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | || | ||||||||||||||||||||||||||| |||| || |
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| T |
36467105 |
tatactttcaaagctaagaactaaaatgagttaattgttcattaaaatctaacaaaagggctatggctaacaaggatactataatgttatagcccattta |
36467204 |
T |
|
| Q |
579 |
ccttggataatagttcaataatcctgcactgtctgcctacat |
620 |
Q |
| |
|
|||| |||| |||||| |||||||||||| |||||||||| |
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|
| T |
36467205 |
ccttagatattagttc---aatcctgcactgcctgcctacat |
36467243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Complemental strand, 33826671 - 33826623
Alignment:
| Q |
300 |
taactacttttaacaaactctaacaatatctaatgattctctaattata |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
33826671 |
taactacttttaacaaactctaacaatatctatcaattcactaattata |
33826623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 300 - 343
Target Start/End: Complemental strand, 10908990 - 10908947
Alignment:
| Q |
300 |
taactacttttaacaaactctaacaatatctaatgattctctaa |
343 |
Q |
| |
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||||||| |||||||||||||||||||||||||| | ||||||| |
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| T |
10908990 |
taactacatttaacaaactctaacaatatctaataaatctctaa |
10908947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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