View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7398_high_10 (Length: 307)

Name: NF7398_high_10
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7398_high_10
NF7398_high_10
[»] chr1 (12 HSPs)
chr1 (1-285)||(47439562-47439844)
chr1 (155-281)||(18033636-18033769)
chr1 (153-281)||(44487635-44487768)
chr1 (138-277)||(47949991-47950136)
chr1 (179-285)||(11908539-11908651)
chr1 (138-283)||(36438343-36438494)
chr1 (156-235)||(50075562-50075641)
chr1 (138-200)||(14149554-14149616)
chr1 (138-235)||(21008154-21008251)
chr1 (202-275)||(31691142-31691210)
chr1 (138-206)||(1607327-1607395)
chr1 (157-233)||(48149612-48149688)
[»] chr7 (6 HSPs)
chr7 (155-284)||(32650054-32650189)
chr7 (167-285)||(32546433-32546557)
chr7 (155-235)||(23031717-23031797)
chr7 (138-206)||(42244476-42244544)
chr7 (157-198)||(25194992-25195033)
chr7 (241-283)||(32948342-32948384)
[»] chr3 (13 HSPs)
chr3 (161-283)||(50163992-50164120)
chr3 (138-285)||(51390258-51390410)
chr3 (162-285)||(38567652-38567781)
chr3 (138-232)||(33967992-33968086)
chr3 (158-276)||(55016111-55016235)
chr3 (138-235)||(34819786-34819883)
chr3 (163-231)||(23317316-23317384)
chr3 (129-200)||(12790010-12790081)
chr3 (157-232)||(33640930-33641005)
chr3 (156-198)||(21758355-21758397)
chr3 (129-235)||(28958528-28958633)
chr3 (165-235)||(47068934-47069004)
chr3 (155-219)||(29793650-29793714)
[»] chr5 (5 HSPs)
chr5 (155-287)||(3494482-3494620)
chr5 (240-282)||(5844422-5844464)
chr5 (138-285)||(42207068-42207220)
chr5 (150-232)||(37193969-37194048)
chr5 (159-232)||(41174123-41174196)
[»] chr2 (13 HSPs)
chr2 (155-285)||(30560956-30561084)
chr2 (159-273)||(2674285-2674396)
chr2 (238-285)||(9707150-9707197)
chr2 (235-285)||(15485811-15485861)
chr2 (160-279)||(33434242-33434366)
chr2 (138-235)||(1688004-1688101)
chr2 (155-274)||(32839062-32839177)
chr2 (142-283)||(11252532-11252679)
chr2 (138-218)||(35813856-35813936)
chr2 (238-281)||(8335294-8335337)
chr2 (138-223)||(43592661-43592746)
chr2 (138-206)||(34074129-34074197)
chr2 (156-224)||(38554159-38554227)
[»] chr8 (6 HSPs)
chr8 (154-233)||(1177538-1177617)
chr8 (156-235)||(18310481-18310560)
chr8 (155-227)||(12398039-12398111)
chr8 (159-219)||(38894477-38894537)
chr8 (242-285)||(5297999-5298042)
chr8 (129-198)||(39400878-39400947)
[»] chr4 (7 HSPs)
chr4 (155-283)||(6942423-6942557)
chr4 (138-233)||(29431781-29431876)
chr4 (138-206)||(30468752-30468820)
chr4 (156-217)||(35147442-35147503)
chr4 (138-277)||(2720532-2720677)
chr4 (156-235)||(27574637-27574716)
chr4 (138-206)||(37861169-37861237)
[»] chr6 (2 HSPs)
chr6 (138-176)||(31237194-31237232)
chr6 (155-232)||(32604487-32604564)
[»] scaffold0095 (1 HSPs)
scaffold0095 (129-198)||(36555-36624)


Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 47439562 - 47439844
Alignment:
Q  1 ggacacaatagttctcctaccaccttcaaaccaaacaggcctattactgaataaatctcttgttgaagtaaaaattgaatactatcatacatttgagttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47439562 ggacacaatagttctcctaccaccttcaaaccaaacaggcctattactgagtaaatctcttgttgaagtaaaaattgaatactatcatacatttgagttg 47439661  T
Q  101 aaatttccttatccactnnnnnnnntataggtgttggtaacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgt 200  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||||||||||  |||||||    
T  47439662 aaatttccttatccactaaaaaaa-tataggtgttggtaacttgtgcctttaaagcataagataa-aaactaaatataaaaatttgattttaaaaattgt 47439759  T
Q  201 acattcgtaattttaaaaacttaaaaatttatcttgtaacatttattttttaattctacttttaggtccttatcttgtgccctta 285  Q
    |||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  47439760 acattcataatcttaaaaatttaaaaatttatcttgtaacatttattttttaattctacttttaggtccttatcttgtaccctta 47439844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 18033769 - 18033636
Alignment:
Q  155 gcacaagataagaaat-taaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct------tgtaacatttatt 247  Q
    |||||| ||||||||  |||||||||||||||||| ||||| ||||| ||||  |||| ||||||||||||||||||||||      || ||||||||||    
T  18033769 gcacaatataagaaaactaaatatagaaatttgatcttggatattgtgcatttataatcttaaaaacttaaaaatttatctttttaatgcaacatttatt 18033670  T
Q  248 ttttaattctacttttaggtccttatcttgtgcc 281  Q
    |||||||||||| ||||| ||||| || ||||||    
T  18033669 ttttaattctacatttagatccttctcatgtgcc 18033636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 281
Target Start/End: Complemental strand, 44487768 - 44487635
Alignment:
Q  153 aagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt------gtaacatttat 246  Q
    ||||||||||||||||| ||||| | ||||||| || || |||||||| ||||| |||| ||||||| |||||| || |||||      |||||||||||    
T  44487768 aagcacaagataagaaactaaatgtcgaaatttaatcttagaaattgtgcattcataatcttaaaaatttaaaactt-atctttttaatgtaacatttat 44487670  T
Q  247 tttttaattctacttttaggtccttatcttgtgcc 281  Q
    ||||||||| ||||||||| || ||||||||||||    
T  44487669 tttttaattttacttttagatcattatcttgtgcc 44487635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 47950136 - 47949991
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct--- 234  Q
    ||||||||||| | |  ||||||||||||||| ||||| ||||||||| || ||| ||||||| ||||| |||  |||||| |||||||| || |||       
T  47950136 taacttgtgccctaagggcacaagataagaaactaaatgtagaaatttaatcttgcaaattgtgcattcataaccttaaaagcttaaaaacttgtctttt 47950037  T
Q  235 ---tgtaacatttattttttaattctacttttaggtccttatcttg 277  Q
       || || |||||||||||||||||| ||| || |||||||||||    
T  47950036 caatgcaatatttattttttaattctattttaagatccttatcttg 47949991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 11908539 - 11908651
Alignment:
Q  179 gaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct------tgtaacatttattttttaattctacttttaggtcctta 272  Q
    ||||||| || ||||||||||| ||||| |||||||||||  ||||||| ||||||      || |||||||||||||||||||||  ||||| || |||    
T  11908539 gaaatttaatcttggaaattgtgcattcataattttaaaagtttaaaaacttatcttttcaatgcaacatttattttttaattctatatttagatcttta 11908638  T
Q  273 tcttgtgccctta 285  Q
    | |||||| ||||    
T  11908639 tattgtgctctta 11908651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 283
Target Start/End: Original strand, 36438343 - 36438494
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct--- 234  Q
    ||||||||||| | |  ||||||||||||||| ||||| |||||| || || ||||||||| | ||||| |||  |||||||||| |||| |||| |       
T  36438343 taacttgtgccctaagggcacaagataagaaactaaatgtagaaacttaatcttggaaattttgcattcataaccttaaaaacttcaaaacttatatttt 36438442  T
Q  235 ---tgtaacatttattttttaattctacttttaggtccttatcttgtgccct 283  Q
       || || |||||||||| ||||||| ||| || ||||||| |||||||||    
T  36438443 caatgcaatatttatttttaaattctattttaagatccttattttgtgccct 36438494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 50075562 - 50075641
Alignment:
Q  156 cacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt 235  Q
    ||||||||||||||||||||| |||||||| |  ||  ||||||| ||||| |||| ||||||  ||||||| |||||||    
T  50075562 cacaagataagaaattaaataaagaaatttaaccttaaaaattgtgcattcataatcttaaaagtttaaaaagttatctt 50075641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 14149616 - 14149554
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgt 200  Q
    ||||||||||| |||  ||||||||||||||| |||||| |||||||| | |||| |||||||    
T  14149616 taacttgtgcccttagggcacaagataagaaactaaataaagaaatttaactttgaaaattgt 14149554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 21008154 - 21008251
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt 235  Q
    ||||||||||| |||  ||||||||||||||| |||||| |||| ||| | |||| |||| || |||||   |  ||||||||||||||| |||||||    
T  21008154 taacttgtgcccttagggcacaagataagaaactaaataaagaattttaactttgaaaatcgtgcattcaataccttaaaaacttaaaaagttatctt 21008251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 275
Target Start/End: Complemental strand, 31691210 - 31691142
Alignment:
Q  202 cattcgtaattttaaaaacttaaaaatttatcttgtaacatttattttttaattctacttttaggtccttatct 275  Q
    ||||| |||||||||||| |||||||||||||     ||||||||| ||||||| || |||||||| |||||||    
T  31691210 cattcataattttaaaaaattaaaaatttatc-----acatttattctttaattatatttttaggttcttatct 31691142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 1607327 - 1607395
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattc 206  Q
    ||||||||||| |||  |||||| |||||||| ||||| ||||||||| | |||| ||||||| |||||    
T  1607327 taacttgtgcccttagggcacaatataagaaactaaatgtagaaatttaactttgaaaattgtgcattc 1607395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 48149612 - 48149688
Alignment:
Q  157 acaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatc 233  Q
    ||||||||| ||| ||||| ||||||||| || ||| || ||||  |||  |||| |||||||||||||||||||||    
T  48149612 acaagataataaactaaatgtagaaatttaatcttgaaagttgtgtatttataatcttaaaaacttaaaaatttatc 48149688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 155 - 284
Target Start/End: Complemental strand, 32650189 - 32650054
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatcttgt------aacatttattt 248  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||| | |||| ||||||||||||||||||||||| |      |||||||||||    
T  32650189 gcacaagataagaaactaaatatagaaatttgatcttggaaattgtgcatgcataatcttaaaaacttaaaaatttatcttttcaatacaacatttattt 32650090  T
Q  249 tttaattctacttttaggtccttatcttgtgccctt 284  Q
    |||||||| |||||||| |||||||| |||||||||    
T  32650089 tttaattccacttttagatccttatcatgtgccctt 32650054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 285
Target Start/End: Original strand, 32546433 - 32546557
Alignment:
Q  167 aaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt------gtaacatttattttttaattctact 260  Q
    |||||| ||||| |||||| || |||||||||||  |||  |||||||||||| |||||||||||||||      ||||||||||||||||||||  |||    
T  32546433 aaattatatataaaaatttaatattggaaattgtgaatttataattttaaaaagttaaaaatttatcttttcaatgtaacatttattttttaatttcact 32546532  T
Q  261 tttaggtccttatcttgtgccctta 285  Q
    ||||| |||||||||| ||||||||    
T  32546533 tttagatccttatcttatgccctta 32546557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 235
Target Start/End: Original strand, 23031717 - 23031797
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt 235  Q
    ||||||||||||||| |||||| |||||||  | |||| ||||||| |||||  ||  |||||||||||||||||||||||    
T  23031717 gcacaagataagaaactaaataaagaaattcaactttgaaaattgtgcattcacaaccttaaaaacttaaaaatttatctt 23031797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 42244544 - 42244476
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattc 206  Q
    |||||||||||||||| ||||||| | |||| |||||| |||||| ||  |||||||||||||||||||    
T  42244544 taacttgtgcctttaacgcacaagtttagaatttaaatgtagaaacttatttttggaaattgtacattc 42244476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 25195033 - 25194992
Alignment:
Q  157 acaagataagaaattaaatatagaaatttgattttggaaatt 198  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  25195033 acaagataagaaattaaatataaaaatttaattttggaaatt 25194992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 32948342 - 32948384
Alignment:
Q  241 atttattttttaattctacttttaggtccttatcttgtgccct 283  Q
    |||||||||||||||| |||||||| || ||||||||||||||    
T  32948342 atttattttttaattccacttttagatctttatcttgtgccct 32948384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 161 - 283
Target Start/End: Original strand, 50163992 - 50164120
Alignment:
Q  161 gataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatcttgt------aacatttattttttaat 254  Q
    ||||| ||| ||||||||| |||||||| ||||||||||| ||||| |||||| |||||||||||| |||||||| |      |||||||||||||||||    
T  50163992 gataaaaaactaaatatagtaatttgatcttggaaattgtgcattcataatttgaaaaacttaaaagtttatcttttcaatacaacatttattttttaat 50164091  T
Q  255 tctacttttaggtccttatcttgtgccct 283  Q
    || |||||||| |||||||||||||||||    
T  50164092 tccacttttagatccttatcttgtgccct 50164120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 138 - 285
Target Start/End: Original strand, 51390258 - 51390410
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct--- 234  Q
    ||||||||||| |||  ||||||||||||||||||||| |||||||||  | ||||||||||| ||||| |||||||||||  || |||||||||||       
T  51390258 taacttgtgcccttagggcacaagataagaaattaaatgtagaaatttagtattggaaattgtgcattcataattttaaaaggtt-aaaatttatctttt 51390356  T
Q  235 ---tgtaacatttattttttaattctacttttaggtccttatcttgtgccctta 285  Q
       || |||||||||| |||||| ||| |||||| | ||||||||||| |||||    
T  51390357 cgatgcaacatttattctttaatactatttttagattcttatcttgtgtcctta 51390410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 38567781 - 38567652
Alignment:
Q  162 ataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt------gtaacatttattttttaatt 255  Q
    |||| ||||||||| || |||||| || ||| ||||||| ||||  |||||||||||  |||||||||||| ||      |||||||||||| |||||||    
T  38567781 ataaaaaattaaatgtaaaaatttaatattgaaaattgtgcatttataattttaaaaggttaaaaatttattttttcgttgtaacatttattctttaatt 38567682  T
Q  256 ctacttttaggtccttatcttgtgccctta 285  Q
     || |||||||| |||||||||||||||||    
T  38567681 atatttttaggttcttatcttgtgccctta 38567652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 33968086 - 33967992
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttat 232  Q
    |||||||||| || || |||||||||||||||  ||||| |||||||| |  ||||||||||| ||||| |||  ||||||||||||||| ||||    
T  33968086 taacttgtgctttaaaggcacaagataagaaacaaaataaagaaatttaacattggaaattgtgcattcataaccttaaaaacttaaaaagttat 33967992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 276
Target Start/End: Original strand, 55016111 - 55016235
Alignment:
Q  158 caagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct------tgtaacatttatttttt 251  Q
    |||||||||||| || |||||  |||||||| ||||||||||| ||||| |||| ||||||||  |||| |||||||      || |||||||| |||||    
T  55016111 caagataagaaactagatataataatttgatcttggaaattgtgcattcataatcttaaaaacacaaaagtttatcttttcaatgcaacatttacttttt 55016210  T
Q  252 aattctacttttaggtccttatctt 276  Q
    ||||| |||||||  ||||||||||    
T  55016211 aattccacttttaaatccttatctt 55016235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 34819883 - 34819786
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt 235  Q
    ||||||||||| | |  ||||||||||| ||| |||||| ||||||||||| ||| ||||||| ||||| |||  ||||||  | |||||||||||||    
T  34819883 taacttgtgccctaagggcacaagataaaaaactaaataaagaaatttgatcttgaaaattgtgcattcataaccttaaaagttaaaaaatttatctt 34819786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 231
Target Start/End: Original strand, 23317316 - 23317384
Alignment:
Q  163 taagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaattta 231  Q
    ||||||| ||||||||| |||||||| ||| ||||||| ||||| || | ||||||| |||||||||||    
T  23317316 taagaaactaaatatagtaatttgatcttgaaaattgtgcattcatagtcttaaaaatttaaaaattta 23317384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 12790010 - 12790081
Alignment:
Q  129 aggtgttggtaacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgt 200  Q
    |||| ||| |||||||||  || | |||||||||||||||||||||| ||||||||| | |||| |||||||    
T  12790010 aggtcttgctaacttgtgtattaagagcacaagataagaaattaaatgtagaaatttaactttgtaaattgt 12790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 33640930 - 33641005
Alignment:
Q  157 acaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttat 232  Q
    |||||||||||||  ||||| |||||||| ||||| |||||| | ||||| ||| ||||||| |||||||| ||||    
T  33640930 acaagataagaaaccaaataaagaaatttaattttagaaattttgcattcataactttaaaatcttaaaaacttat 33641005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 21758397 - 21758355
Alignment:
Q  156 cacaagataagaaattaaatatagaaatttgattttggaaatt 198  Q
    ||||||||||||||||||||| |||||||| | ||||||||||    
T  21758397 cacaagataagaaattaaataaagaaatttaactttggaaatt 21758355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 235
Target Start/End: Original strand, 28958528 - 28958633
Alignment:
Q  129 aggtgttggtaacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaat 228  Q
    |||||||| ||||||||||| |   |||||||||||||||| |||||| |||||||| | |||| ||| |||| |||| | |  |||||| ||| |||||    
T  28958528 aggtgttgttaacttgtgccctaggagcacaagataagaaactaaataaagaaatttaactttgaaaagtgtatattcatgaccttaaaagctt-aaaat 28958626  T
Q  229 ttatctt 235  Q
    |||||||    
T  28958627 ttatctt 28958633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 47069004 - 47068934
Alignment:
Q  165 agaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt 235  Q
    |||||||||||| |||||||| |  ||  ||||||| ||||| ||| |||||||||||||||| |||||||    
T  47069004 agaaattaaataaagaaatttaacattaaaaattgtgcattcataactttaaaaacttaaaaaattatctt 47068934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 29793650 - 29793714
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaa 219  Q
    ||||||||||| ||| |||||||||||||||||| ||| ||||| |  |||| |||| |||||||    
T  29793650 gcacaagataataaactaaatatagaaatttgatcttgaaaattatgtattcataatcttaaaaa 29793714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 287
Target Start/End: Complemental strand, 3494620 - 3494482
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatcttgt------aacatttattt 248  Q
    |||||| |||| ||| |||||||| ||||||||| ||| ||||||| ||||| |||| ||||||||||||||||||||||| |      |||||||||||    
T  3494620 gcacaaaataaaaaactaaatataaaaatttgatcttgaaaattgtgcattcataatcttaaaaacttaaaaatttatctttttaatacaacatttattt 3494521  T
Q  249 tttaattctacttttaggtccttatcttgtgcccttaag 287  Q
    |||||||| | |||||| ||||||||||||| |||||||    
T  3494520 tttaattccatttttagatccttatcttgtgtccttaag 3494482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 5844422 - 5844464
Alignment:
Q  240 catttattttttaattctacttttaggtccttatcttgtgccc 282  Q
    ||||||||||||||||||| ||||||||||||||||| |||||    
T  5844422 catttattttttaattctatttttaggtccttatcttatgccc 5844464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 285
Target Start/End: Complemental strand, 42207220 - 42207068
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct--- 234  Q
    ||||||||||||| |  ||||| |||||||||| | || ||||||||| || ||| ||||||| ||||| |||||||||||||| ||||  |||| |       
T  42207220 taacttgtgccttaagtgcacatgataagaaat-atatgtagaaatttaatcttgtaaattgtgcattcataattttaaaaactcaaaaccttatatttt 42207122  T
Q  235 ---tgtaacatttattttttaattctacttttaggtccttatcttgtgccctta 285  Q
       || ||||||||||| |||||| || |||||| || |||||||||| |||||    
T  42207121 caatgcaacatttatttcttaattttatttttagatctttatcttgtgtcctta 42207068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 37193969 - 37194048
Alignment:
Q  150 ttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttat 232  Q
    |||| |||||||||||||||||||||||||||   | | ||| |||||||| ||||| ||| ||||||| |||||||| ||||    
T  37193969 ttaaggcacaagataagaaattaaatatagaa---taactttagaaattgtgcattcataactttaaaatcttaaaaacttat 37194048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Original strand, 41174123 - 41174196
Alignment:
Q  159 aagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttat 232  Q
    ||||||||||| |||||||| |||||| |  ||| ||||||||||||| |||  |||||| |||||||| ||||    
T  41174123 aagataagaaactaaatataaaaatttaaccttgaaaattgtacattcataaacttaaaatcttaaaaacttat 41174196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 155 - 285
Target Start/End: Complemental strand, 30561084 - 30560956
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatcttgtaacatttattttttaat 254  Q
    ||||||||||||||| ||||| ||||||||  || ||||||||||| ||||| |||| ||||||||||  |  |||    || ||||||||||||| |||    
T  30561084 gcacaagataagaaactaaatgtagaaattcaatcttggaaattgtgcattcataatcttaaaaactt--atcttttcaatgcaacatttatttttaaat 30560987  T
Q  255 tctacttttaggtccttatcttgtgccctta 285  Q
    ||||||||||| ||| |||||||||||||||    
T  30560986 tctacttttagatccctatcttgtgccctta 30560956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 2674285 - 2674396
Alignment:
Q  159 aagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatcttgtaacatttattttttaattcta 258  Q
    ||||||||||| ||||| ||||||||| || ||| ||||||| ||||| |||| ||||||  ||||| |||||   | || |||||||||||||||||||    
T  2674285 aagataagaaactaaatgtagaaatttaatattgaaaattgtgcattcataatcttaaaagtttaaacattta---tatatcatttattttttaattcta 2674381  T
Q  259 cttttaggtccttat 273  Q
     |||||||| |||||    
T  2674382 tttttaggttcttat 2674396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 9707150 - 9707197
Alignment:
Q  238 aacatttattttttaattctacttttaggtccttatcttgtgccctta 285  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||||    
T  9707150 aacatttattttttaattctatttttagatctttatcttgtgccctta 9707197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Original strand, 15485811 - 15485861
Alignment:
Q  235 tgtaacatttattttttaattctacttttaggtccttatcttgtgccctta 285  Q
    |||||||||| ||||||||||| | |||||| |||||||||||||||||||    
T  15485811 tgtaacattttttttttaattccaattttagatccttatcttgtgccctta 15485861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 33434366 - 33434242
Alignment:
Q  160 agataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatcttgt------aacatttattttttaa 253  Q
    |||||||||| ||||  ||||||||| || ||||||||||| |||||  ||| |||||||  | |||||||||||| |      ||||||||||||||||    
T  33434366 agataagaaactaaag-tagaaatttaatcttggaaattgtgcattcaaaatcttaaaaagcttaaaatttatcttttcaatgaaacatttattttttaa 33434268  T
Q  254 ttctacttttaggtccttatcttgtg 279  Q
    ||||| ||||||||  ||||||||||    
T  33434267 ttctatttttaggttattatcttgtg 33434242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 1688101 - 1688004
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt 235  Q
    ||||||||||||| |  |||| |||||| ||| ||||| || |||||| |||||  ||||||||||||| |||||| ||||  ||||||| |||||||    
T  1688101 taacttgtgccttaagggcactagataataaactaaatgtaaaaatttaattttaaaaattgtacattcataatttaaaaagtttaaaaacttatctt 1688004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 274
Target Start/End: Original strand, 32839062 - 32839177
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatcttgtaacatttattttttaat 254  Q
    ||||||||||||||| |||||| |||||||| |  || |||||||| ||||| |||  ||||||| | ||||| |||||||   | ||||||| ||||||    
T  32839062 gcacaagataagaaactaaataaagaaatttaaccttagaaattgtgcattcataaccttaaaaattaaaaaacttatctt---atatttattgtttaat 32839158  T
Q  255 tctacttttaggtccttatc 274  Q
    |||| |||||| ||||||||    
T  32839159 tcta-ttttagatccttatc 32839177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 283
Target Start/End: Original strand, 11252532 - 11252679
Alignment:
Q  142 ttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatcttgtaa-- 239  Q
    |||||| ||||  ||||||||||||||| ||||| | | ||||| || || ||||||||  |||| |||| ||||||  || |||| ||||||| | |      
T  11252532 ttgtgcttttatggcacaagataagaaactaaatgtggtaatttaatcttagaaattgtgaattcataatcttaaaagtttcaaaacttatcttttcaat 11252631  T
Q  240 ----catttattttttaattctacttttaggtccttatcttgtgccct 283  Q
        |||||||||| |||||||| |||||| |||||||||||||||||    
T  11252632 acaccatttattttctaattctatttttagatccttatcttgtgccct 11252679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 218
Target Start/End: Complemental strand, 35813936 - 35813856
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaa 218  Q
    ||||||||||| | |  ||| ||||||||||| |||||| ||||||||||  ||||||||||| ||||| |||| ||||||    
T  35813936 taacttgtgccctaagggcaaaagataagaaactaaataaagaaatttgaccttggaaattgtgcattcataatcttaaaa 35813856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 8335294 - 8335337
Alignment:
Q  238 aacatttattttttaattctacttttaggtccttatcttgtgcc 281  Q
    ||||||||||||||||||||| |||||| ||||| |||||||||    
T  8335294 aacatttattttttaattctatttttagatccttctcttgtgcc 8335337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 43592661 - 43592746
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaactta 223  Q
    ||||||||||| | |  ||||||||||||||| |||||| ||||| || |  ||||||||||| ||||| |||  |||||||||||    
T  43592661 taacttgtgccctaagggcacaagataagaaactaaataaagaaagttaaccttggaaattgtgcattcataaccttaaaaactta 43592746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 34074129 - 34074197
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattc 206  Q
    ||||||||||| | ||| |||||| | |||| |||||| ||||||||| ||||||||||| || |||||    
T  34074129 taacttgtgccctcaaaacacaagtttagaagttaaatgtagaaatttcattttggaaatcgtgcattc 34074197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 224
Target Start/End: Complemental strand, 38554227 - 38554159
Alignment:
Q  156 cacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaa 224  Q
    |||||||||||||| ||||  || |||||  || ||| ||||||| ||||| |||||||||||||||||    
T  38554227 cacaagataagaaactaaaagtataaattcaatattgaaaattgtgcattcataattttaaaaacttaa 38554159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 233
Target Start/End: Original strand, 1177538 - 1177617
Alignment:
Q  154 agcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatc 233  Q
    ||||||| |||| |||||||||||| ||||||||| || |||||||||||||| |||| ||||||| |||||| ||||||    
T  1177538 agcacaaaataataaattaaatataaaaatttgatcttagaaattgtacattcataatcttaaaaatttaaaactttatc 1177617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 18310481 - 18310560
Alignment:
Q  156 cacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt 235  Q
    ||||| |||||||||||||| || |||||| || || |||||||||||||| ||| |||||||  ||||||| |||||||    
T  18310481 cacaaaataagaaattaaatgtaaaaatttaatcttagaaattgtacattcataactttaaaagattaaaaacttatctt 18310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 227
Target Start/End: Original strand, 12398039 - 12398111
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaa 227  Q
    ||||||||||||||| |||| | |||||||| |  ||||||||||||||||| |||  |||||| ||||||||    
T  12398039 gcacaagataagaaactaaaaaaagaaatttaaccttggaaattgtacattcataaccttaaaagcttaaaaa 12398111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 38894477 - 38894537
Alignment:
Q  159 aagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaa 219  Q
    |||||||||||||||||||| |||||| |||||| ||||||| ||||  ||||||| ||||    
T  38894477 aagataagaaattaaatataaaaatttaattttgaaaattgtgcatttataatttttaaaa 38894537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 5297999 - 5298042
Alignment:
Q  242 tttattttttaattctacttttaggtccttatcttgtgccctta 285  Q
    ||||||||||||||||| |||||||| |||||||||||| ||||    
T  5297999 tttattttttaattctatttttaggttcttatcttgtgctctta 5298042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Original strand, 39400878 - 39400947
Alignment:
Q  129 aggtgttggtaacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaatt 198  Q
    |||| ||| ||||||||| ||| | || | ||||||||||||||||| || |||||| ||||||||||||    
T  39400878 aggttttgctaacttgtgtcttaagagaataagataagaaattaaatgtaaaaatttaattttggaaatt 39400947  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 283
Target Start/End: Original strand, 6942423 - 6942557
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct------tgtaacatttattt 248  Q
    ||||||||||||||| ||||| ||| ||||| |||||||||||||| ||||| | || ||||||  ||||||| ||||||      ||  ||||||||||    
T  6942423 gcacaagataagaaactaaatgtagtaatttaattttggaaattgtgcattcttgatcttaaaagtttaaaaacttatcttttcaatgccacatttattt 6942522  T
Q  249 tttaattctacttttaggtccttatcttgtgccct 283  Q
    |||||||||| |||||| |  ||||||||||||||    
T  6942523 tttaattctatttttagatttttatcttgtgccct 6942557  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 29431781 - 29431876
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatc 233  Q
    ||||||||||| | |  ||||||||||||||| |||||| |||||||  | |||| ||||||| |||||  || ||||||||||||||||||||||    
T  29431781 taacttgtgccctaagggcacaagataagaaactaaataaagaaattcaactttgaaaattgtgcattcacaactttaaaaacttaaaaatttatc 29431876  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 30468820 - 30468752
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattc 206  Q
    ||||||||||||| || ||||||| | |||||  ||||||||||| || ||||||||||||||||||||    
T  30468820 taacttgtgccttaaaggcacaagtttagaaaccaaatatagaaacttaattttggaaattgtacattc 30468752  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 217
Target Start/End: Complemental strand, 35147503 - 35147442
Alignment:
Q  156 cacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaa 217  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||  |||| |||| |||||    
T  35147503 cacaagataagaaatttaatgtagaaatttaattttggaaattgtggattcataatcttaaa 35147442  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 277
Target Start/End: Complemental strand, 2720677 - 2720532
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaa-ttaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatct-- 234  Q
    |||||| |||| | || ||||||||||| ||| |||||||||||||||  |||||||||||||| ||||   ||| || ||| |||||||| ||||||      
T  2720677 taacttatgccctaaaggcacaagataaaaaaattaaatatagaaattaaattttggaaattgtgcatttagaatctt-aaagcttaaaaagttatctct 2720579  T
Q  235 ----tgtaacatttattttttaattctacttttaggtccttatcttg 277  Q
        || || ||||| |||||||||||| |||||| |||||||||||    
T  2720578 tcaatgcaatatttaatttttaattctatttttagatccttatcttg 2720532  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 235
Target Start/End: Complemental strand, 27574716 - 27574637
Alignment:
Q  156 cacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttatctt 235  Q
    |||||||||||||| | || |||||||||| | |||  ||||||| ||||| ||| ||||||| ||||||| ||||||||    
T  27574716 cacaagataagaaactgaacatagaaatttaactttaaaaattgtgcattcataactttaaaatcttaaaattttatctt 27574637  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 37861169 - 37861237
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaattgtacattc 206  Q
    ||||||||||| |||| ||||||| | |||||  |||| |||||| || |||||||||||||| |||||    
T  37861169 taacttgtgcccttaaggcacaagtttagaaaccaaatgtagaaacttaattttggaaattgtgcattc 37861237  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 31237194 - 31237232
Alignment:
Q  138 taacttgtgcctttaaagcacaagataagaaattaaata 176  Q
    |||||||| |||| |||||||||||||||||||||||||    
T  31237194 taacttgttccttaaaagcacaagataagaaattaaata 31237232  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Original strand, 32604487 - 32604564
Alignment:
Q  155 gcacaagataagaaattaaatatagaaatttgattttggaaattgtacattcgtaattttaaaaacttaaaaatttat 232  Q
    ||||||||||||||| |||||| |||||||| |  ||| ||||||| ||||| ||||  ||| | |||||||||||||    
T  32604487 gcacaagataagaaactaaataaagaaatttaacattgaaaattgtgcattcataatcctaacagcttaaaaatttat 32604564  T

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Target: scaffold0095 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 36624 - 36555
Alignment:
Q  129 aggtgttggtaacttgtgcctttaaagcacaagataagaaattaaatatagaaatttgattttggaaatt 198  Q
    |||| ||| ||||||||| ||| | || | ||||||||||||||||| || |||||| ||||||||||||    
T  36624 aggttttgctaacttgtgtcttaagagaataagataagaaattaaatgtaaaaatttaattttggaaatt 36555  T

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