View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7398_high_13 (Length: 272)
Name: NF7398_high_13
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7398_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 265
Target Start/End: Original strand, 8445447 - 8445674
Alignment:
| Q |
38 |
tgtggaagcttttctagactttgttttgagaattaaaaggaaaagagaagtgagtgttttggggggatagaatgagtaaagggaagtggaagacacctca |
137 |
Q |
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| T |
8445447 |
tgtgcaagcttttctagactttgttttgagaattaaaaggaaaagagaagtgagtgttttgggaggatagaatgagtaaagggaagtggaagacacctca |
8445546 |
T |
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| Q |
138 |
acttgtatgaatgtttatcnnnnnnncaataaaactaaaattattctgtatggagagccctaaaatacatttgaaattgaaatgatggatatgatataca |
237 |
Q |
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| T |
8445547 |
acttgtatggatgtttatctttttttcaataaaactaaaattattctgtatggagagccctaaaatacatttgaaattgaaatgatggatatgatataca |
8445646 |
T |
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| Q |
238 |
attgggcaatacattgattttcatctct |
265 |
Q |
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| T |
8445647 |
attgggcaatacattgattttcatctct |
8445674 |
T |
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