View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7398_high_3 (Length: 632)
Name: NF7398_high_3
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7398_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 517; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 43 - 608
Target Start/End: Original strand, 40614860 - 40615420
Alignment:
| Q |
43 |
ctcacactctctcagccatcttcgctaccgatgatcatgacccggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactat |
142 |
Q |
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| T |
40614860 |
ctcacactctctcagccatcttcgctaccgatgatcatgagccggtgaatctcactctccgtgttatctctcgtcccgatgttcaatgtcttcctactat |
40614959 |
T |
|
| Q |
143 |
tgttcagaatcttggtcttgattcttgaatacgataagattcttcattctattgctaatgaggttctcgaatccgttgttgctaaatctagtccgttgat |
242 |
Q |
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| T |
40614960 |
tgttcagaatcttggtcttgattcttgaatatgataagattcttcattctattgctaatgaggttctcga-tccgttgttgctaaatctagtccgttgat |
40615058 |
T |
|
| Q |
243 |
gctttttataagtcattcttggtattctgatcgtgttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggttgacattact |
342 |
Q |
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| T |
40615059 |
gctttttataagtcattcttggtattctgatcgagttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggttgacattact |
40615158 |
T |
|
| Q |
343 |
cgtttctcttgtactgacaaccctaggtaaatatttatttgtctatttgataataatcatatttttgaatatattgataatctatatgactaacttgatg |
442 |
Q |
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| T |
40615159 |
cgtttctcttgtactgacaaccctagataaatatttatttgtctatttgataataatcatatttttgaatatattgataatctatatgactaacttgatg |
40615258 |
T |
|
| Q |
443 |
ttgctctacatttcagagactgaattgtttgggtatttatttattttacggatccatctgattttagggtttcaactttagggaccgatctgaaagtgct |
542 |
Q |
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| T |
40615259 |
ttgctctacatttcagagactgaattgtttgggtatttatttattttacggatccatctgattttagggtttcaactttagggaccaatctgaaagtgct |
40615358 |
T |
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| Q |
543 |
aactaaagataacattaatttgaactaaaattacccgcaatttatcatatcaagatgttttgtcaa |
608 |
Q |
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| T |
40615359 |
aactaaagataac----atttgaactaaaattacccgcaatttatcatatcaagatgttttgtcaa |
40615420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 51 - 351
Target Start/End: Original strand, 40610934 - 40611227
Alignment:
| Q |
51 |
ctctcagccatcttcgctaccgatgatcatgacccggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcaga |
150 |
Q |
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| T |
40610934 |
ctctcagccatctccgctaccgatgatcatgagccggtgaatctcactctccgtgttatctctcgtcccgaggttcaacgtcttcctactattgttcaga |
40611033 |
T |
|
| Q |
151 |
atcttggtcttgattcttgaatacgataagattcttcattctattgctaatgaggttctcgaatccgttgttgctaaatctagtccgttgatgcttttta |
250 |
Q |
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| T |
40611034 |
atcttggtcttga-------atatgacaagattcttaattttattgctaatgaggttctcgaatctattgttgctaaatcgagtcttttaatgcttttta |
40611126 |
T |
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| Q |
251 |
taagtcattcttggtattctgatcgtgttagagatgcttttgttcaacgtgctaaggatgtaaatattcttattgacgaggttgacattactcgtttctc |
350 |
Q |
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| T |
40611127 |
gaagtcattcttggttttctgaacgtgttaaggatgcttttgttggacgtgctaaggatttaaatattcttattgacgagattgatattactcatttctc |
40611226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 384 - 485
Target Start/End: Original strand, 40612811 - 40612914
Alignment:
| Q |
384 |
tctatttgataataatcatatttttgaatatattgataatctatatgactaacttgatgttgctc--tacatttcagagactgaattgtttgggtattta |
481 |
Q |
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||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
40612811 |
tctattttataaaaatcattttttgaaatatattgataatctatatgactaacttgatgttgctctatacatttcagagactgaattgggtgggtattta |
40612910 |
T |
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| Q |
482 |
ttta |
485 |
Q |
| |
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|||| |
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| T |
40612911 |
ttta |
40612914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 86 - 163
Target Start/End: Complemental strand, 1385109 - 1385032
Alignment:
| Q |
86 |
ggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcagaatcttggtcttga |
163 |
Q |
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||||||||||||||| |||||| |||||||||| ||| || || ||||||||||||||||||||||||| |||||||| |
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| T |
1385109 |
ggtgaatctcactcttcgtgttctctctcgtcctgatactgaacgtcttcctactattgttcagaatctcggtcttga |
1385032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 86 - 163
Target Start/End: Original strand, 231737 - 231814
Alignment:
| Q |
86 |
ggtgaatctcactctccgtgttatctctcgtcccgatgctcaatgtcttcctactattgttcagaatcttggtcttga |
163 |
Q |
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| T |
231737 |
ggtgaattttactcttcgtgttctctctcgtcctgatactcaatgtcttcctactattgttcggaattttggtcttga |
231814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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