View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7398_high_4 (Length: 542)
Name: NF7398_high_4
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7398_high_4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 16 - 542
Target Start/End: Complemental strand, 35772272 - 35771746
Alignment:
| Q |
16 |
gtaacaccccacaaccttttatcctctctgttgaccattctccctcctcattttcaagtgaaaattgaaaggacatgttgtaaggattatcccaccctcc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35772272 |
gtaacaccccacaaccttttatcctctctgttgaccattctccctcctcattttcaagtgaaaattgaaaggacatgttgtaaggattatcccaccctcc |
35772173 |
T |
|
| Q |
116 |
acgtttttgtatttggccatgcaaagaaatgtgtgtagcaccacctctaatatcaagataccaaagaaacacgtgatccctaaccaaatgtaaattaccc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35772172 |
acgtttttgtatttggccatgcaaagaaatgtgtgtagcaccacctctaatatcaagataccaaagaaacacgtgatccctaaccaaatgtaaattaccc |
35772073 |
T |
|
| Q |
216 |
aaagaggtagcttttccacctatgtattttgaattttggtaaatgttgcattgaatagctccgtacttgtcatttgacttggaaaggaccaggcacaaca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35772072 |
aaagaggtagcttttccacctatgtattttgaattttggtaaatgttgcactgaatagctccgtacttgtcatttgacttggaaaggaccaggcacaaca |
35771973 |
T |
|
| Q |
316 |
caaaaccgtataaaccagattcaggaagatgcccaactgttacttcagaagttgaacactgaggatgattttcttcagaacaaaaactaaatcttttagg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35771972 |
caaaaccgtataaaccagattcaggaagatgcccaactgttacttcagaagttgaacactgaggatgattttcttcagaacaaaaactaaatcttttagg |
35771873 |
T |
|
| Q |
416 |
aacatgagttccagggaagaacacagattgaggatatggttgaggtttcgatctatgttcaaagggtatgtccaatgtagtaaggtcagtgacaagagaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35771872 |
aacatgagttccagggaagaacacagattgaggatatggttgaggtttcgatctatgttcaaagggtatgtccaatgtagtaaggtcagtgacaagagaa |
35771773 |
T |
|
| Q |
516 |
atgcagttaatagcactaaacaatcgc |
542 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35771772 |
atgcagttaatagcactaaacaatcgc |
35771746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University