View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7398_high_5 (Length: 417)

Name: NF7398_high_5
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7398_high_5
NF7398_high_5
[»] chr4 (5 HSPs)
chr4 (16-405)||(15554968-15555357)
chr4 (108-370)||(37147403-37147664)
chr4 (80-352)||(35160481-35160753)
chr4 (152-279)||(35154162-35154289)
chr4 (82-130)||(16298996-16299044)
[»] chr8 (3 HSPs)
chr8 (75-355)||(9677513-9677793)
chr8 (74-352)||(9693257-9693535)
chr8 (82-130)||(30652024-30652072)
[»] chr3 (11 HSPs)
chr3 (109-234)||(46507118-46507246)
chr3 (104-352)||(46490018-46490266)
chr3 (37-352)||(46469609-46469924)
chr3 (52-355)||(46478224-46478527)
chr3 (116-355)||(45900894-45901133)
chr3 (105-206)||(5155255-5155356)
chr3 (149-280)||(46497380-46497511)
chr3 (52-209)||(16023881-16024038)
chr3 (52-171)||(4582559-4582678)
chr3 (146-235)||(47414955-47415044)
chr3 (96-144)||(46527717-46527765)
[»] chr2 (3 HSPs)
chr2 (95-244)||(20143496-20143645)
chr2 (74-205)||(20154380-20154511)
chr2 (95-231)||(20169878-20170014)
[»] chr6 (1 HSPs)
chr6 (82-233)||(16967863-16968014)
[»] chr1 (1 HSPs)
chr1 (82-130)||(33097480-33097528)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 16 - 405
Target Start/End: Original strand, 15554968 - 15555357
Alignment:
Q  16 agaaagaatggagttccgtcatgaatcaatgatcacccaaaccaacgtttcactcaaaatcgctaaacatctcttctctaaacaatccaacaacaacatt 115  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  15554968 agaaagaatggagttccgtcgtgaatcaatgatcacccaaaccaacgtttcactcaaaatcgctaaacatctcttctctaaacaacccaacaacaacatt 15555067  T
Q  116 gtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccgcttcaaat 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  15555068 gtgttttcacctctctcgattcaagttattctcagcatcatcgctgctggctctgagggttccacacagcaacaacttctcgacttcctccgctttaaat 15555167  T
Q  216 ccatccatcaactcaactccgtcatctctcgcctcgtttccgtcatcctcaaagacgctgctccctccggcgggcctcgcctttctgtcgccaacgttgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | |||    
T  15555168 ccatccatcaactcaactccgtcatctctcgcctcgtttccgtcatcctcaaagacgctgctccctccggcgggccttgcctctctgtcgccaatggtgt 15555267  T
Q  316 ttgggttgaacaaacactctctcttcaaacttccttccaaaagattgtttcttctgattttcaagccaagttggcttccgttgatgtcca 405  Q
     |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  15555268 gtgggttgagcaaaccctttctcttcaaacttccttccaaaagattgtttcttctgatttccaagccaagttggcttccgttgatttcca 15555357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 108 - 370
Target Start/End: Original strand, 37147403 - 37147664
Alignment:
Q  108 acaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccg 207  Q
    |||||||||||||||| ||  | ||| | |||||| |||| || || |||||||| |||||  ||||| ||||||| |||||| |||| |||||||||      
T  37147403 acaacattgtgttttcgcccttgtcgctccaagttgttctaagtattatcgctgctggctccaagggtcccacacaacaacaaattctcgacttcctcga 37147502  T
Q  208 cttcaaatccatccatcaactcaactccgtcatctctcgcctcgtttccgtcatcctcaaagacgctgctccctccggcgggcctcgcctttctgtcgcc 307  Q
    ||| ||||||||| ||||  ||||||   || | ||||  || |||||| |||||||||||||||||||| ||| |||  |||||||||||||||| |||    
T  37147503 ctttaaatccatcaatcatgtcaacttattcgtttctcagcttgtttccatcatcctcaaagacgctgct-cctgcgggcggcctcgcctttctgtagcc 37147601  T
Q  308 aacgttgtttgggttgaacaaacactctctcttcaaacttccttccaaaagattgtttcttct 370  Q
    || | ||| ||| |||||||| |||| |||||||||  ||||||| || | ||||| ||||||    
T  37147602 aatggtgtgtggattgaacaatcactttctcttcaacattccttcaaacaaattgtgtcttct 37147664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 80 - 352
Target Start/End: Original strand, 35160481 - 35160753
Alignment:
Q  80 aaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttcca 179  Q
    |||||||||||||| ||| ||||  | || ||||| |||||||| ||| | ||  | |||||| | |||||||| ||| |||| |||||||||||||| |    
T  35160481 aaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggctctgagggttcaa 35160580  T
Q  180 cacagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaactccgtca-tctctcgcctcgtttccgtcatcctcaaagacgctgctc 278  Q
    |||| ||||| ||||||||||||||||| ||||||||||   |||| ||||||||| ||| ||||||  |   ||||| ||||||||||||||||| ||     
T  35160581 cacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaactcc-tcagtctctcatcaactttccatcatcctcaaagacgctactt 35160679  T
Q  279 cctccggcgggcctcgcctttctgtcgccaacgttgtttgggttgaacaaacactctctcttcaaacttccttc 352  Q
    | ||||| || |||| ||| ||| ||| | ||| ||||||| | ||| |||| || ||||||||| ||||||||    
T  35160680 cttccggtggtcctcacctctctttcgtcgacggtgtttggctggaaaaaaccctttctcttcaatcttccttc 35160753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 152 - 279
Target Start/End: Original strand, 35154162 - 35154289
Alignment:
Q  152 atcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaactccgtcatctctcgcctcg 251  Q
    ||||||||||| |||||||| ||||||||||  ||||| |||||  |||||||||  |||||||||  | |||| ||||||||| || ||||||  |||     
T  35154162 atcatcgctgctggctctgacggttccacacgacaacagcttctcaacttcctccaattcaaatccgcctatcatctcaactccttcgtctctcaactca 35154261  T
Q  252 tttccgtcatcctcaaagacgctgctcc 279  Q
    ||||||||||| ||||||||||| ||||    
T  35154262 tttccgtcatcttcaaagacgctactcc 35154289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 16298996 - 16299044
Alignment:
Q  82 acatctcttctctaaacaatccaacaacaacattgtgttttcaccactc 130  Q
    |||||||||||| ||| ||||  |||||||||| |||||||||||||||    
T  16298996 acatctcttctccaaagaatcagacaacaacatcgtgttttcaccactc 16299044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 75 - 355
Target Start/End: Complemental strand, 9677793 - 9677513
Alignment:
Q  75 tcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgaggg 174  Q
    |||| |||||||||||||| ||| ||||  |||||||| | || ||||||||| | ||  | |||||| ||||||| ||||||||||| |||||||||||    
T  9677793 tcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgctggctctgaggg 9677694  T
Q  175 ttccacacagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaactccgtcatctctcgcctcgtttccgtcatcctcaaagacgct 274  Q
    | | || || ||||| ||||| ||||||||||| |||||||||||| |||| ||||||||| || ||||||  ||| |||| ||| |||||||||| ||     
T  9677693 tcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaactccttcgtctctcatctcctttctgtcctcctcaaagatgca 9677594  T
Q  275 gctccctccggcgggcctcgcctttctgtcgccaacgttgtttgggttgaacaaacactctctcttcaaacttccttccaa 355  Q
    ||| | ||||| || |||||||| ||| ||||||| | ||| ||||| ||  |||  || ||||||||| |||||||||||    
T  9677593 gcttcttccggtggtcctcgcctctctttcgccaatggtgtatgggtggagaaaaacctttctcttcaaccttccttccaa 9677513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 74 - 352
Target Start/End: Complemental strand, 9693535 - 9693257
Alignment:
Q  74 atcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagg 173  Q
    ||||| |||||||||||||| ||| ||||  |||| ||  | || ||||||||| | ||  | |||||| ||||||||||||||||||  |||||||| |    
T  9693535 atcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgttggctctgacg 9693436  T
Q  174 gttccacacagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaactccgtcatctctcgcctcgtttccgtcatcctcaaagacgc 273  Q
    || | || || ||||| ||||||||||||||||| |||||||||||| |||| ||||||| | |  ||||||  ||| |||  ||| |||||||||||||    
T  9693435 gtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaacttctttgtctctcatctcctttatgtcctcctcaaagacgc 9693336  T
Q  274 tgctccctccggcgggcctcgcctttctgtcgccaacgttgtttgggttgaacaaacactctctcttcaaacttccttc 352  Q
      || | ||||| || |||| ||| ||| ||||||| | ||| ||||| ||  |||| || ||||||||| ||||||||    
T  9693335 aacttcttccggtggtcctcacctctctttcgccaatggtgtgtgggtagagaaaaccctttctcttcaaccttccttc 9693257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 30652024 - 30652072
Alignment:
Q  82 acatctcttctctaaacaatccaacaacaacattgtgttttcaccactc 130  Q
    |||||||||||| ||| ||||  |||||||||| |||||||||||||||    
T  30652024 acatctcttctccaaagaatcagacaacaacatcgtgttttcaccactc 30652072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 46507246 - 46507118
Alignment:
Q  109 caacattgtgttttcaccactctcgattcaagttattctcagcatcat---cgctgccggctctgagggttccacacagcaacaacttcttgacttcctc 205  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||| || |||||  ||||||||||||||    
T  46507246 caacattatgttttcaccactctcgattcaagttattctcagcatcataatcgctgccggctctgagggtcccactcaacaacagattcttgacttcctc 46507147  T
Q  206 cgcttcaaatccatccatcaactcaactc 234  Q
     ||| |||||| |||||||| ||||||||    
T  46507146 tgctccaaatctatccatcatctcaactc 46507118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 104 - 352
Target Start/End: Original strand, 46490018 - 46490266
Alignment:
Q  104 aacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcc 203  Q
    ||||| ||||||||||| || ||||| ||| | |||||| | ||||||||||||||||| |||||||| || |||||||| ||||| |||||||||||||    
T  46490018 aacaagaacattgtgttatcgccactttcgctccaagttgtactcagcatcatcgctgctggctctgacggctccacacaacaacagcttcttgacttcc 46490117  T
Q  204 tccgcttcaaatccatccatcaactcaactccgtcatctctcgcctcgtttccgtcatcctcaaagacgctgctccctccggcgggcctcgcctttctgt 303  Q
    |||  |  || |||| | |||||||||||||  ||  ||||   |||||||||||||| |||||||||| ||||||| | ||||| ||||| || ||| |    
T  46490118 tccaatctaactccaccgatcaactcaactcattcgcctctaagctcgtttccgtcattctcaaagacggtgctcccgctggcggacctcgtctctcttt 46490217  T
Q  304 cgccaacgttgtttgggttgaacaaacactctctcttcaaacttccttc 352  Q
     | | ||| ||| ||||| ||| |||| || ||||||||| ||||||||    
T  46490218 tgtcgacggtgtgtgggtggaaaaaaccctttctcttcaaccttccttc 46490266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 352
Target Start/End: Original strand, 46469609 - 46469924
Alignment:
Q  37 tgaatcaatgatcacccaaaccaacgtttcactcaaaatcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgatt 136  Q
    ||||||||| | || ||||||||| ||||| || || || || |||||||||||||| ||| ||||  |||| ||| |||||||||| || || ||  |     
T  46469609 tgaatcaatcaccaaccaaaccaaagtttcccttaacatggccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcactc 46469708  T
Q  137 caagttattctcagcatcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaactccg 236  Q
    |||||||| |||| |||  ||||||| | ||||||||||   ||||| ||||||||||| || |||||||| | |||||||||| | || |||||||||     
T  46469709 caagttatgctcaacattgtcgctgctgcctctgagggtcgtacacaacaacaacttctcgaattcctccgttccaaatccatcgaccatctcaactcct 46469808  T
Q  237 tcatctctcgcctcgtttccgtcatcctcaaagacgctgctccctccggcgggcctcgcctttctgtc-gccaacgttgtttgggttgaacaaacactct 335  Q
    |||  ||||  ||||||||| |||||||    || |||||||| ||||| ||| | ||||| ||| ||  |||||| ||| |||||||| ||||| || |    
T  46469809 tcacttctcatctcgtttccatcatcctatctgatgctgctccttccggtgggtcgcgcctctctttcacccaacg-tgtgtgggttgatcaaacccttt 46469907  T
Q  336 ctcttcaaacttccttc 352  Q
    |||||||| ||||||||    
T  46469908 ctcttcaaccttccttc 46469924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 355
Target Start/End: Original strand, 46478224 - 46478527
Alignment:
Q  52 ccaaaccaacgtttcactcaaaatcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagc 151  Q
    |||||||||||| |||||||   | || |||||||||||||| ||| ||||  |||||||||| |||||||| ||||| ||  | |||||| | || ||     
T  46478224 ccaaaccaacgtatcactcagcgttgcaaaacatctcttctccaaagaatcagacaacaacatcgtgttttctccactttcactccaagttgtgctaagt 46478323  T
Q  152 atcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaactccgtcatctctcgcctcg 251  Q
    || |||||| | || ||||||||| |||| || ||||||||| |  ||||||| |  | |||||||| | |||| ||||||| | ||   || |  ||||    
T  46478324 ataatcgcttctggttctgagggtcccactcaacaacaacttttcaacttccttcaatccaaatccaccgatcatctcaactacttcgcttcacagctcg 46478423  T
Q  252 tttccgtcatcctcaaagacgctgctccctccggcgggcctcgcctttctgtcgccaacgttgtttgggttgaacaaacactctctcttcaaacttcctt 351  Q
    ||||||||||||||   |||||| ||||| |||| || |||| ||| ||| ||| | ||| |||||||||||| ||||| || ||||||||| |||||||    
T  46478424 tttccgtcatcctctccgacgcttctcccgccggtggtcctctcctctctttcgtcgacggtgtttgggttgatcaaaccctttctcttcaaccttcctt 46478523  T
Q  352 ccaa 355  Q
    ||||    
T  46478524 ccaa 46478527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 116 - 355
Target Start/End: Original strand, 45900894 - 45901133
Alignment:
Q  116 gtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccgcttcaaat 215  Q
    |||||||| ||||||||| | |||||||||||||||||||| ||||| ||  |||||||| | ||||| || || ||| |  |||||||||  ||  |||    
T  45900894 gtgttttctccactctcgctccaagttattctcagcatcattgctgctggtgctgagggtccaacacaacagcagcttatccacttcctccaatttgaat 45900993  T
Q  216 ccatccatcaactcaactccgtcatctctcgcctcgtttccgtcatcctcaaagacgctgctccctccggcgggcctcgcctttctgtcgccaacgttgt 315  Q
    ||| | | || ||||||||  |   |||||| |||||| | ||| ||||| |||||||||||||  | |||||| || |||| ||||| ||||| | |||    
T  45900994 ccaccgaccatctcaactcttttgcctctcggctcgttactgtcgtcctccaagacgctgctcctgctggcgggacttgcctctctgttgccaatggtgt 45901093  T
Q  316 ttgggttgaacaaacactctctcttcaaacttccttccaa 355  Q
     | |||||| |||||||| ||||||||| |||||||||||    
T  45901094 gttggttgatcaaacactttctcttcaaccttccttccaa 45901133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 5155255 - 5155356
Alignment:
Q  105 acaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcct 204  Q
    |||| |||||||||||||| ||||| ||  |||||||| | || |||||||||||||| |||||||||||| ||||||| ||||| ||||| ||||||||    
T  5155255 acaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaacagcttctcgacttcct 5155354  T
Q  205 cc 206  Q
    ||    
T  5155355 cc 5155356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 280
Target Start/End: Original strand, 46497380 - 46497511
Alignment:
Q  149 agcatcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaactccgtcatctctcgcc 248  Q
    |||||||||||| | ||||| |||||  ||||||| |||||||||||  |||||||||  | |||||||| | |||||||||||||| ||  ||||  ||    
T  46497380 agcatcatcgctactggctccgagggccccacacaacaacaacttctcaacttcctccaatccaaatccacctatcaactcaactccttcgcctctaccc 46497479  T
Q  249 tcgtttccgtcatcctcaaagacgctgctccc 280  Q
    |||| |||||||| || |||||||||||||||    
T  46497480 tcgtctccgtcattctaaaagacgctgctccc 46497511  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 209
Target Start/End: Original strand, 16023881 - 16024038
Alignment:
Q  52 ccaaaccaacgtttcactcaaaatcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagc 151  Q
    |||||||||||| || ||||| ||||  ||||||||||| || ||||||||  |||| |||||  ||||||| || || ||  |||||||| ||||||||    
T  16023881 ccaaaccaacgtatccctcaacatcgtcaaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttgttctcagc 16023980  T
Q  152 atcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccgct 209  Q
     | |||||||| || || |||||  | ||||| ||||| |||||  ||||||||||||    
T  16023981 cttatcgctgctggatccgagggaccgacacaacaacagcttctccacttcctccgct 16024038  T

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Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 171
Target Start/End: Complemental strand, 4582678 - 4582559
Alignment:
Q  52 ccaaaccaacgtttcactcaaaatcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagc 151  Q
    |||||| || ||||| |||| |||||| ||| |||||||||| ||| ||||  | || |||||||||||||| ||||| ||| | ||||||   ||||||    
T  4582678 ccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctccaagttgcgctcagc 4582579  T
Q  152 atcatcgctgccggctctga 171  Q
    || |||||||| ||||||||    
T  4582578 atgatcgctgctggctctga 4582559  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 47415044 - 47414955
Alignment:
Q  146 ctcagcatcatcgctgccggctctgagggttccacacagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaactcc 235  Q
    |||| |||||| || || |||||||||||| ||||||| ||| | ||||| ||||||||| |||  ||||||||  |||| |||||||||    
T  47415044 ctcatcatcattgcggctggctctgagggtaccacacatcaaaagcttctcgacttcctcggctcaaaatccattgatcatctcaactcc 47414955  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 144
Target Start/End: Complemental strand, 46527765 - 46527717
Alignment:
Q  96 aacaatccaacaacaacattgtgttttcaccactctcgattcaagttat 144  Q
    ||||||||||||| ||||| |||||||| ||||||||| | ||||||||    
T  46527765 aacaatccaacaagaacatcgtgttttctccactctcgctccaagttat 46527717  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 20143496 - 20143645
Alignment:
Q  95 aaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttccacacagcaacaacttc 194  Q
    ||||||||  |||| ||||| |||||||| ||||| ||  | ||| || | |||||| | |||||||| || ||||| | | ||||||| |||||||||     
T  20143496 aaacaatcagacaagaacatcgtgttttcgccactatcactccaaattgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttg 20143595  T
Q  195 ttgacttcctccgcttcaaatccatccatcaactcaactccgtcatctct 244  Q
    | |||||||||||||||||||||| | |||| || |||||| ||| ||||    
T  20143596 tcgacttcctccgcttcaaatccaccaatcatcttaactccttcacctct 20143645  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 20154380 - 20154511
Alignment:
Q  74 atcgctaaacatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagg 173  Q
    ||||| |||||||| ||||  ||||||||  |||| |||||||||||||| ||| | ||  | |||||| |  ||||| ||| |||||| |||||||| |    
T  20154380 atcgccaaacatctgttcttgaaacaatcagacaagaacattgtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaag 20154479  T
Q  174 gttccacacagcaacaacttcttgacttcctc 205  Q
    || ||||||| ||||| ||| | |||||||||    
T  20154480 gtcccacacaacaacagcttgtcgacttcctc 20154511  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 20170014 - 20169878
Alignment:
Q  95 aaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttccacacagcaacaacttc 194  Q
    ||||||||  |||| ||| | |||||||||||||| ||  ||||| || | |||||| | || ||| | || ||||| ||| ||||| | |||||||||     
T  20170014 aaacaatcagacaaaaacgtcgtgttttcaccactatcacttcaaattgtgctcagccttattgctactggttctgaaggtcccacaaaacaacaacttg 20169915  T
Q  195 ttgacttcctccgcttcaaatccatccatcaactcaa 231  Q
    | ||||||||||| |||||||||| | |||| |||||    
T  20169914 tcgacttcctccgtttcaaatccaccaatcatctcaa 20169878  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 82 - 233
Target Start/End: Complemental strand, 16968014 - 16967863
Alignment:
Q  82 acatctcttctctaaacaatccaacaacaacattgtgttttcaccactctcgattcaagttattctcagcatcatcgctgccggctctgagggttccaca 181  Q
    |||||| ||||| ||| ||||  |||||||||| |||||||||||||||||  | |||||| |  | ||||| ||||||   || ||||||||| ||||     
T  16968014 acatctattctccaaagaatcggacaacaacatcgtgttttcaccactctcactccaagttgtgttaagcataatcgcttttggttctgagggtcccact 16967915  T
Q  182 cagcaacaacttcttgacttcctccgcttcaaatccatccatcaactcaact 233  Q
    || ||||||||| |  | |||||||  | |||||||||| |||| |||||||    
T  16967914 caacaacaacttttcaaattcctccaatccaaatccatcgatcatctcaact 16967863  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 33097480 - 33097528
Alignment:
Q  82 acatctcttctctaaacaatccaacaacaacattgtgttttcaccactc 130  Q
    |||||||||||| ||| ||||  |||||||||| |||||||||||||||    
T  33097480 acatctcttctccaaagaatcagacaacaacatcgtgttttcaccactc 33097528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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