View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7398_high_6 (Length: 400)

Name: NF7398_high_6
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7398_high_6
NF7398_high_6
[»] chr7 (5 HSPs)
chr7 (16-384)||(33992911-33993278)
chr7 (304-387)||(33983525-33983608)
chr7 (97-217)||(33992862-33992984)
chr7 (307-383)||(34014968-34015044)
chr7 (311-383)||(34005117-34005189)
[»] chr5 (2 HSPs)
chr5 (329-382)||(14092169-14092222)
chr5 (321-380)||(14103822-14103881)
[»] chr6 (3 HSPs)
chr6 (329-381)||(9237868-9237920)
chr6 (329-381)||(9218360-9218412)
chr6 (324-387)||(30420195-30420258)
[»] chr4 (3 HSPs)
chr4 (329-381)||(15158594-15158646)
chr4 (329-381)||(15158940-15158992)
chr4 (347-384)||(16945520-16945557)
[»] chr2 (2 HSPs)
chr2 (321-383)||(37264262-37264324)
chr2 (316-384)||(8004898-8004966)
[»] chr1 (1 HSPs)
chr1 (321-365)||(6588298-6588342)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 384
Target Start/End: Original strand, 33992911 - 33993278
Alignment:
Q  16 acaaatacaattgcgatccagggcagcgtatgaaaatcttgctttaattaataatcattatgaattcatatcttatcacctatgctacctcaatcgcaat 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33992911 acaaatacaattgcgatccagggcagcgtatgaaaatcttgctttaattaataatcattatgtattcatatcttatcacctatgctacctcaatcgcaat 33993010  T
Q  116 agtattatagatatc-aaaaccatatgtcacaagtacaattgcggttgattgcaatttatgaaaattttgctttgataaataatctttatgtattcgtat 214  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33993011 agtattatagatatcaaaaaccatatgtcacaagtacaattgcggttgattgcaatttatgaaaattttgctttgataactaatctttatgtattcgtat 33993110  T
Q  215 cttgttattctttcttttcttgtc--nnnnnnnntgcattcatatcttgcatatgaaaaaataagctaaacttatttacaatgnnnnnnngtgcaaattg 312  Q
    |||||||    ||||||| |||||          || |||| |||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  33993111 cttgtta----ttctttttttgtcaaaaaaaaaatgtattcgtatcttgcatatgaaaaaataagctaaacttatttacaatgtttttttgtgcaaattg 33993206  T
Q  313 aaaattgtagttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatga 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33993207 aaaattgtagttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatga 33993278  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 33983525 - 33983608
Alignment:
Q  304 tgcaaattgaaaattgtagttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatgatat 387  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33983525 tgcaaattgaaaattgtagctaggtatggcaagtgcattggaaacactatgtggacaagcatatggagcaaaacaatatgatat 33983608  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 33992862 - 33992984
Alignment:
Q  97 atgctacctcaatcgcaatagtattatagatatcaaaaccat--atgtcacaagtacaattgcggttgattgcaatttatgaaaattttgctttgataaa 194  Q
    ||||||||||||||||||| |||||||||| ||||||| | |  ||||||||| |||||||||| |  |  |||   ||||||||| ||||||| || ||    
T  33992862 atgctacctcaatcgcaattgtattatagacatcaaaaaccttgatgtcacaaatacaattgcgatccagggcagcgtatgaaaatcttgctttaattaa 33992961  T
Q  195 taatctttatgtattcgtatctt 217  Q
    ||||| |||||||||| ||||||    
T  33992962 taatcattatgtattcatatctt 33992984  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 383
Target Start/End: Original strand, 34014968 - 34015044
Alignment:
Q  307 aaattgaaaattgtagttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatg 383  Q
    ||||||| | || ||||| || ||||| |||||||| | ||||||||||||||||||||| || |||||| ||||||    
T  34014968 aaattgatatttttagttaggaatggctagtgcattggcaacactatgtggacaagcatacggtgcaaaagaatatg 34015044  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 383
Target Start/End: Original strand, 34005117 - 34005189
Alignment:
Q  311 tgaaaattgtagttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatg 383  Q
    ||||||||||||||||| ||||| | ||| ||   ||| || ||||||||||||||||| |||||| ||||||    
T  34005117 tgaaaattgtagttgggaatggcgactgcgttgtcaaccctttgtggacaagcatatggtgcaaaagaatatg 34005189  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 14092169 - 14092222
Alignment:
Q  329 atggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatat 382  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14092169 atggcaagtgcattagaaactttatgtggacaagcatatggagcaaaacaatat 14092222  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 380
Target Start/End: Original strand, 14103822 - 14103881
Alignment:
Q  321 agttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaat 380  Q
    ||||||||||| |||| || || ||||| |||||||||||||||| |||||| |||||||    
T  14103822 agttgggtatgtcaagcgctttggaaactctatgtggacaagcatttggagccaaacaat 14103881  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 9237920 - 9237868
Alignment:
Q  329 atggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaata 381  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  9237920 atggcaagtgcattggaaacactttgtggacaagcatatggagcaaaacaata 9237868  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 9218412 - 9218360
Alignment:
Q  329 atggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaata 381  Q
    |||||||||||||| |||||||| |||||||| ||||||||||||||||||||    
T  9218412 atggcaagtgcattggaaacactttgtggacaggcatatggagcaaaacaata 9218360  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 387
Target Start/End: Complemental strand, 30420258 - 30420195
Alignment:
Q  324 tgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatgatat 387  Q
    |||||||| ||||||||||||| ||| | ||||| ||||||||||||||| |||||||| ||||    
T  30420258 tgggtatgtcaagtgcattagacacattttgtgggcaagcatatggagcacaacaatatcatat 30420195  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 381
Target Start/End: Complemental strand, 15158646 - 15158594
Alignment:
Q  329 atggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaata 381  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  15158646 atggcaagtgcattggaaacactttgtggacaagcatatggagcaaaacaata 15158594  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 381
Target Start/End: Original strand, 15158940 - 15158992
Alignment:
Q  329 atggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaata 381  Q
    |||||||||||||| |||||||| |||||||||| ||||||||||||||||||    
T  15158940 atggcaagtgcattggaaacactttgtggacaagtatatggagcaaaacaata 15158992  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Complemental strand, 16945557 - 16945520
Alignment:
Q  347 acactatgtggacaagcatatggagcaaaacaatatga 384  Q
    ||||||||||||||||||| |||||||||| |||||||    
T  16945557 acactatgtggacaagcatttggagcaaaaaaatatga 16945520  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 383
Target Start/End: Original strand, 37264262 - 37264324
Alignment:
Q  321 agttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatg 383  Q
    |||||||||||| ||||||| | || ||||||||||||||||||||||||||| || ||||||    
T  37264262 agttgggtatgggaagtgcagttgagacactatgtggacaagcatatggagcagaaaaatatg 37264324  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 8004966 - 8004898
Alignment:
Q  316 attgtagttgggtatggcaagtgcattagaaacactatgtggacaagcatatggagcaaaacaatatga 384  Q
    |||| ||||||| |||| ||||||| | || ||| ||||||||||||||||||| |||||  |||||||    
T  8004966 attgcagttgggcatgggaagtgcagtggagacattatgtggacaagcatatggtgcaaacaaatatga 8004898  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 365
Target Start/End: Complemental strand, 6588342 - 6588298
Alignment:
Q  321 agttgggtatggcaagtgcattagaaacactatgtggacaagcat 365  Q
    |||||||||||| ||||||||| || ||||||||||| |||||||    
T  6588342 agttgggtatgggaagtgcattggagacactatgtgggcaagcat 6588298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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