View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7398_low_15 (Length: 290)
Name: NF7398_low_15
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7398_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 44872662 - 44872409
Alignment:
| Q |
20 |
aataacattgaaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctga |
119 |
Q |
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| T |
44872662 |
aataacattgaaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctga |
44872563 |
T |
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| Q |
120 |
gtattgtccacaagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaa |
219 |
Q |
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| T |
44872562 |
gtattgtccacaagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaa |
44872463 |
T |
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| Q |
220 |
catcttttttatttgggttggaggttttggtatattgacaaaaagtgtaggtgg |
273 |
Q |
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| T |
44872462 |
catcttttttatttgggttggaggttttggtatattgacaaaaagtgtaggtgg |
44872409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 47527011 - 47527244
Alignment:
| Q |
30 |
aaatagtgtttttgtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctgagtattgtcca |
129 |
Q |
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| T |
47527011 |
aaattgtgtttttgtgcagattggtatatgaattgaagtttttgatatggattctcgttcactacctcctgatatcaacatagtacctgagcattgtcca |
47527110 |
T |
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| Q |
130 |
caagctgtgtttgaatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaacatctttttt |
229 |
Q |
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| T |
47527111 |
gaagctgtaagagaatggtaccgcttaacaggactacatgatcctaaagaaagtgctggtagaaaggatttgactttgaaagcaaaacaacatcttcttt |
47527210 |
T |
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| Q |
230 |
atttgggttggaggttttggtatattgacaaaaa |
263 |
Q |
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| T |
47527211 |
ctttgggttggaagttatggtacattgacaaaaa |
47527244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 43 - 263
Target Start/End: Original strand, 47521775 - 47521995
Alignment:
| Q |
43 |
gtgcagattggtatacagtttggagtttttgatatggattctcgttcaccacctcctcatatcaacatagaacctgagtattgtccacaagctgtgtttg |
142 |
Q |
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| T |
47521775 |
gtgcagatttgtatatgatttggattttttgatatggcttctcgttcagtacctcctgatatcaacataaaacctgagcattgtccagaagctgtaagag |
47521874 |
T |
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| Q |
143 |
aatggtatcgcttaacaggattaaaagatcgtaaagaaagctttagaagaaaggatttggctttgaaagcaaaacaacatcttttttatttgggttggag |
242 |
Q |
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| T |
47521875 |
aatggtaccgcttaacaggactacaagatcgtaaagaaagtgctggtagaaagaatttggctttgaaagcaaaacaacatcttctttctttgggttggaa |
47521974 |
T |
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| Q |
243 |
gttttggtatattgacaaaaa |
263 |
Q |
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| T |
47521975 |
gttttggtacattgacaaaaa |
47521995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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