View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7398_low_21 (Length: 240)
Name: NF7398_low_21
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7398_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32482394 - 32482618
Alignment:
| Q |
1 |
ttgttttgtgtaattttctggagacgcacacaaaacacggtatcccataaaccatttttcacaaatcccaattaattctctctcaactgtttcttgattt |
100 |
Q |
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| T |
32482394 |
ttgttttgtgtaattttctggagacgcacacaaaacacggtatcccataaaccatttttcacaaatcccaattaattctctctcaactgtttcttgattt |
32482493 |
T |
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| Q |
101 |
ctcatgttctttgtaccnnnnnnnnnnnncctatttaggtttttgatatggaaattgagacacaattaaagaaactattgttgttagggttaaggnnnnn |
200 |
Q |
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| T |
32482494 |
ctcatgttctttgtaccaaaaacaaaaaacctatttaggtttttgatatggaaattgagacacaattaaagaaagtattgttgttagggttaaggttttt |
32482593 |
T |
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| Q |
201 |
nncttcaaagaaatggctggtttgt |
225 |
Q |
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||||||||||||||||||||||| |
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| T |
32482594 |
ttcttcaaagaaatggctggtttgt |
32482618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11308502 - 11308535
Alignment:
| Q |
1 |
ttgttttgtgtaattttctggagacgcacacaaa |
34 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
11308502 |
ttgttttgtggaattttctggagacgcacacaaa |
11308535 |
T |
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