View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7398_low_3 (Length: 719)

Name: NF7398_low_3
Description: NF7398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7398_low_3
NF7398_low_3
[»] chr4 (10 HSPs)
chr4 (17-389)||(30265092-30265463)
chr4 (17-389)||(30286724-30287096)
chr4 (17-389)||(30279832-30280202)
chr4 (465-578)||(30265541-30265654)
chr4 (465-578)||(30279641-30279754)
chr4 (465-578)||(30286533-30286646)
chr4 (603-700)||(30265679-30265776)
chr4 (603-700)||(30279519-30279616)
chr4 (603-700)||(30286411-30286508)
chr4 (468-503)||(46826711-46826746)
[»] chr8 (1 HSPs)
chr8 (468-503)||(17102208-17102243)
[»] chr2 (1 HSPs)
chr2 (468-503)||(14395163-14395198)


Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Original strand, 30265092 - 30265463
Alignment:
Q  17 atttccataatttgttttacatagtctcacacctcttcttttgtcataaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30265092 atttccataatttgttttacatagtctcacacctcttcttttgtcctaaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttt 30265191  T
Q  117 tgatcataaacgtggctcttgaacgggtaaaaattgtactggtagctagtaatgagtaaatgagccacattcgtacttaattgtatggtcacacgactga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30265192 tgatcataaacgtggctcttgaacgggtaaaaattgtactggtagctagtaatgtgtaaatgagccacattcgtacttaattgtatggtcacacgactga 30265291  T
Q  217 catggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaatttacaccatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30265292 catggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaatttacaccatgt 30265391  T
Q  317 aacagttttaatacctctttttacattaagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 389  Q
     ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  30265392 -acagttttaatacctctttttacattaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30265463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 30287096 - 30286724
Alignment:
Q  17 atttccataatttgttttacatagtctcacacctcttcttttgtcataaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287096 atttccataatttgttttacatagtctcacacctcttcttttgtcctaaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttt 30286997  T
Q  117 tgatcataaacgtggctcttgaacgggtaaaaattgtactggtagctagtaatgagtaaatgagccacattcgtacttaattgtatggtcacacgactga 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30286996 tgatcataaacgtggctcttgaacgggtaaaaattgtactggtagctagtaatgtgtaaatgagccacattcgtacttaattgtatggtcacacgactga 30286897  T
Q  217 catggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaatttacaccatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30286896 catggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaatttacaccatgt 30286797  T
Q  317 aacagttttaatacctctttttacatt-aagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 389  Q
     |||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||    
T  30286796 -acagttttaatacctctttttacattaaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30286724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 17 - 389
Target Start/End: Complemental strand, 30280202 - 30279832
Alignment:
Q  17 atttccataatttgttttacatagtctcacacctcttcttttgtcataaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30280202 atttccataatttgttttacatagtctcacacctcttcttttgtcctaaaataaaaaagaagataaaatttgcaaatttgaatatattttcatttccttt 30280103  T
Q  117 tgatcataaacgtggctcttgaacgggtaaaaattgtactggtagctagtaatgagtaaatgagccacattcgtacttaattgtatggtcacacgactga 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30280102 tgatcataaacgtggctcttgaacgggtaaaa-ttgtactggtagctagtaatgtgtaaatgagccacattcgtacttaattgtatggtcacacgactga 30280004  T
Q  217 catggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaatttacaccatgt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30280003 catggtgattaatatgtcaataaattgtgataaatgtagccggcaatttgtacgaaaatgattaattttgacctgcttcaaccaaaaatttacaccatgt 30279904  T
Q  317 aacagttttaatacctctttttacattaagtnnnnnnntaagggaaaccctagcttgtgtctttatgacacat 389  Q
     ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||    
T  30279903 -acagttttaatacctctttttacattaagtaaaaaaataagggaaaccctagcttgtgtctttatgacacat 30279832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 465 - 578
Target Start/End: Original strand, 30265541 - 30265654
Alignment:
Q  465 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 564  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30265541 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30265640  T
Q  565 gaaaccctacttga 578  Q
    ||||||||||||||    
T  30265641 gaaaccctacttga 30265654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 465 - 578
Target Start/End: Complemental strand, 30279754 - 30279641
Alignment:
Q  465 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 564  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30279754 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30279655  T
Q  565 gaaaccctacttga 578  Q
    ||||||||||||||    
T  30279654 gaaaccctacttga 30279641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 465 - 578
Target Start/End: Complemental strand, 30286646 - 30286533
Alignment:
Q  465 gtgataaatatttaccatttatagaatccttaacatgtgataaaactatctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 564  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30286646 gtgataaatatttactatttatagaatccttaacatgtgataaaactacctcttattaaactcttgtttttctatctttggtcatcaaacacgtaactat 30286547  T
Q  565 gaaaccctacttga 578  Q
    ||||||||||||||    
T  30286546 gaaaccctacttga 30286533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 603 - 700
Target Start/End: Original strand, 30265679 - 30265776
Alignment:
Q  603 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnnnatgacttcacatgttgtgtttataattatt 700  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  30265679 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt 30265776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 603 - 700
Target Start/End: Complemental strand, 30279616 - 30279519
Alignment:
Q  603 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnnnatgacttcacatgttgtgtttataattatt 700  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  30279616 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt 30279519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 603 - 700
Target Start/End: Complemental strand, 30286508 - 30286411
Alignment:
Q  603 gttgttaacaattgattgaatgatcccttnnnnnnnncaattgattgaatgatattgtgnnnnnnnnnatgacttcacatgttgtgtttataattatt 700  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||         ||||||||||||||||||||||||||||||    
T  30286508 gttgttaacaattgattgaatgatcccttaaaaaaaacaattgattgaatgatattgtgtttttttttatgacttcacatgttgtgtttataattatt 30286411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 503
Target Start/End: Original strand, 46826711 - 46826746
Alignment:
Q  468 ataaatatttaccatttatagaatccttaacatgtg 503  Q
    ||||||||||||||||||| ||||||||||||||||    
T  46826711 ataaatatttaccatttatggaatccttaacatgtg 46826746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 503
Target Start/End: Original strand, 17102208 - 17102243
Alignment:
Q  468 ataaatatttaccatttatagaatccttaacatgtg 503  Q
    ||||||||||||||||||| ||||||||||||||||    
T  17102208 ataaatatttaccatttatggaatccttaacatgtg 17102243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 468 - 503
Target Start/End: Original strand, 14395163 - 14395198
Alignment:
Q  468 ataaatatttaccatttatagaatccttaacatgtg 503  Q
    |||||||||||||||||||| |||||||||||||||    
T  14395163 ataaatatttaccatttataaaatccttaacatgtg 14395198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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