View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7399_high_3 (Length: 428)
Name: NF7399_high_3
Description: NF7399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7399_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 6 - 413
Target Start/End: Complemental strand, 6968166 - 6967759
Alignment:
| Q |
6 |
tgcaatttgtgtaaagctttctctgcctcttacttagaccaatttctttaccttgttccaaaacatggttaaggtaagatttctcaacgaaatcgcgatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968166 |
tgcaatttgtgtaaagctttctctgcctcttacttagaccaatttctttaccttgttccaaaacatggttaaggtaagatttctcaacgaaatcgcgatg |
6968067 |
T |
|
| Q |
106 |
actacgatgaaatgtgagaaggtagaatcttttgtctgaagctggatagaatgaaacagaatttgtgttggggacaatcttgattagactccaaacaaac |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968066 |
actacgatgaaatgtgagaaggtagaatcttttgtctgaagctggatagaatgaaacagaatttgtgttggggacaatcttgattagactccaaacaaac |
6967967 |
T |
|
| Q |
206 |
ttaaccccttcaaactcatcataaaacttttgtctttcatccatctttagaactaaagactttctcacatattcaccttggagtttctttgcttggttgg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967966 |
ttaaccccttcaaactcatcataaaacttttgtctttcatccatctttagaactaaagactttctcacatattcaccttggagtttctttgcttggttgg |
6967867 |
T |
|
| Q |
306 |
ttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataatcaccaatgttctcaaagaatctaacctcaacaaaagggta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6967866 |
ttgatttagatgttaagtagttttcaatgtataagaaagcttcattggttctcatataatcaccaatgttctcaaagaatctaacctcaacaaaagggta |
6967767 |
T |
|
| Q |
406 |
acaaaagt |
413 |
Q |
| |
|
|||||||| |
|
|
| T |
6967766 |
acaaaagt |
6967759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University