View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7399_high_8 (Length: 250)

Name: NF7399_high_8
Description: NF7399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7399_high_8
NF7399_high_8
[»] chr8 (1 HSPs)
chr8 (23-238)||(41736927-41737141)
[»] chr4 (2 HSPs)
chr4 (2-63)||(16901403-16901464)
chr4 (2-63)||(18350002-18350063)
[»] chr2 (1 HSPs)
chr2 (2-63)||(6487726-6487787)
[»] chr5 (2 HSPs)
chr5 (2-61)||(2913207-2913266)
chr5 (2-57)||(40162848-40162903)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 23 - 238
Target Start/End: Original strand, 41736927 - 41737141
Alignment:
Q  23 aaaaaatattcttaatcataaacatataaggaaatacacgaactttgaaagnnnnnnnnncaaagataacttctttataggtgaagagaagttttcaatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  41736927 aaaaaatattcttaatcataaacatataaggaaatacacgaactttgaaagaaaaaaaa-caaagataacttctttataggtgaagagaagttttcaatt 41737025  T
Q  123 tgatatgcaggaaagtctgtcattattaatcttctaaattataatggattacaataagttaagctacagtggtgttgacgaaatttggtctttctttaga 222  Q
    | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  41737026 tcatatgcaggaaagtctgtcattattaatcttctaaatcataatggattacaataagttaagctacagtggtgttaacgaaatttggtctttctttaga 41737125  T
Q  223 caacgctactcatatt 238  Q
    ||||||||||||||||    
T  41737126 caacgctactcatatt 41737141  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 16901403 - 16901464
Alignment:
Q  2 aattcaaagatatcaaataggaaaaaatattcttaatcataaacatataaggaaatacacga 63  Q
    ||||||||| ||||||||||||||||||||| ||||||||| || || ||||||||||||||    
T  16901403 aattcaaaggtatcaaataggaaaaaatatttttaatcatagacctacaaggaaatacacga 16901464  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 18350002 - 18350063
Alignment:
Q  2 aattcaaagatatcaaataggaaaaaatattcttaatcataaacatataaggaaatacacga 63  Q
    ||||||||| ||||||||||||||||| ||| ||||||||| || || ||||||||||||||    
T  18350002 aattcaaaggtatcaaataggaaaaaagatttttaatcatagacctacaaggaaatacacga 18350063  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Original strand, 6487726 - 6487787
Alignment:
Q  2 aattcaaagatatcaaataggaaaaaatattcttaatcataaacatataaggaaatacacga 63  Q
    ||||||||| ||||||||||||||||||||| ||||||||| || || ||| ||||||||||    
T  6487726 aattcaaaggtatcaaataggaaaaaatatttttaatcatagacctacaagaaaatacacga 6487787  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 2913207 - 2913266
Alignment:
Q  2 aattcaaagatatcaaataggaaaaaatattcttaatcataaacatataaggaaatacac 61  Q
    ||||||||| ||||||||||| |||| |||| ||||||||| || |||||||||||||||    
T  2913207 aattcaaaggtatcaaatagggaaaattatttttaatcatagacctataaggaaatacac 2913266  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 40162903 - 40162848
Alignment:
Q  2 aattcaaagatatcaaataggaaaaaatattcttaatcataaacatataaggaaat 57  Q
    ||||||||| ||| ||||||||||||||||| ||||||||| || || ||||||||    
T  40162903 aattcaaaggtattaaataggaaaaaatatttttaatcatagacttacaaggaaat 40162848  T

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