View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7399_low_10 (Length: 237)

Name: NF7399_low_10
Description: NF7399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7399_low_10
NF7399_low_10
[»] chr8 (1 HSPs)
chr8 (35-222)||(41736738-41736925)
[»] chr4 (2 HSPs)
chr4 (41-132)||(16901262-16901353)
chr4 (41-132)||(18349861-18349952)
[»] chr5 (2 HSPs)
chr5 (41-126)||(2913071-2913156)
chr5 (41-85)||(14698530-14698574)
[»] chr2 (1 HSPs)
chr2 (41-84)||(6487632-6487675)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 35 - 222
Target Start/End: Complemental strand, 41736925 - 41736738
Alignment:
Q  35 attcctcataagtattgtttggataaaaagattcattctctttgtaaaaaagtgaaggtggaatcaataaagatttcctttttgattcatcccgggagaa 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41736925 attcctcataagtattgtttggataaaaagattcattctctttgtaaaaaagtgaaggtggaatcaataaagatttcctttttgattcatccctggagaa 41736826  T
Q  135 ttaatagaaaaaatgttagcacaaacgtcatgcggcgtgatgagcttcactgcaaacactaagatgctccttgcttaccacaattatg 222  Q
    |||||||||    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41736825 ttaatagaattttttttagcacaaacgtcatgcggcgtgatgagcttcactgcaaacactaagatgctccttgcttaccacaattatg 41736738  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 16901353 - 16901262
Alignment:
Q  41 cataagtattgtttggataaaaagattcattctctttgtaaaaaagtgaaggtggaatcaataaagatttcctttttgattcatcccgggag 132  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| | |||| ||| ||||||||||||| ||||||||||||||| ||||    
T  16901353 cataggtattgtttggataaaaagattcattctcttcgtaaaaaagaggaggtagaaccaataaagatttcttttttgattcatccctggag 16901262  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 18349952 - 18349861
Alignment:
Q  41 cataagtattgtttggataaaaagattcattctctttgtaaaaaagtgaaggtggaatcaataaagatttcctttttgattcatcccgggag 132  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||| | |||| ||| ||||||| ||||| ||||||||||||||| ||||    
T  18349952 cataggtattgtttggataaaaagattcattctcttcgtaaaaaagaggaggtagaaccaataaaaatttcttttttgattcatccctggag 18349861  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 126
Target Start/End: Complemental strand, 2913156 - 2913071
Alignment:
Q  41 cataagtattgtttggataaaaagattcattctctttgtaaaaaagtgaaggtggaatcaataaagatttcctttttgattcatcc 126  Q
    |||| |||||||||||||||||||| |||||||||| ||||||||| | ||||  || ||||||||||||| ||||||||||||||    
T  2913156 cataggtattgtttggataaaaagagtcattctcttcgtaaaaaagaggaggtaaaaccaataaagatttcttttttgattcatcc 2913071  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 14698530 - 14698574
Alignment:
Q  41 cataagtattgtttggataaaaagattcattctctttgtaaaaaa 85  Q
    |||| ||||| ||||||||||||| ||||||||||||||||||||    
T  14698530 cataggtattatttggataaaaaggttcattctctttgtaaaaaa 14698574  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 6487675 - 6487632
Alignment:
Q  41 cataagtattgtttggataaaaagattcattctctttgtaaaaa 84  Q
    |||| ||||||||||||||||||||||||||||||| |||||||    
T  6487675 cataggtattgtttggataaaaagattcattctcttcgtaaaaa 6487632  T

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