View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7399_low_3 (Length: 592)
Name: NF7399_low_3
Description: NF7399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7399_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 15 - 579
Target Start/End: Complemental strand, 30730651 - 30730087
Alignment:
| Q |
15 |
aatctaaacagtcattaattaatgaatcagaaaacttatactacatgacagtgtaaaaggtgaaatgagaatatatttaggatgtagcataccatctttg |
114 |
Q |
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| T |
30730651 |
aatctaaacagtgattaattaatgaatcagaaaacttatactacatgacagtgtaaaaggtgaaatgagaatatatttaggatgtagcataccatctttg |
30730552 |
T |
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| Q |
115 |
aagattttgtcttgggctagggctgcgattctttgcttgatagcactgttatcaacatttagaagcaacctctgatgatccaaatatgcaacccgtggtg |
214 |
Q |
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| T |
30730551 |
aagattttgtcttgggctagggctgcgattctttgcttgatagcactgttatcaacatttagaagcaacctctgatgatccaaatatgcaacccgtggtg |
30730452 |
T |
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| Q |
215 |
acagcactgatacttcagccttcatacgtcaataaattatacaataagttaaaacaaaatataatcataatattaatattaagtactatacacatcaaat |
314 |
Q |
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| T |
30730451 |
acagcactgatacttcagccttcatacatcaataaattatacaataagttaaaacaaaatataatcataatattaatattaagtactatacacatcaaat |
30730352 |
T |
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| Q |
315 |
tattagtatatgcttgtataaagttatgttaccatcatgttcaatgtaactattaaattcacctgtaatgaagtcacacttctctcaagctctgatatgt |
414 |
Q |
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| T |
30730351 |
tataagtatatgcttgtataaagttatgttaccatcatgttcaatgtaactattaaattcacctgtaatgaagtcacacttctctcaagctctgatatgt |
30730252 |
T |
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| Q |
415 |
attgcagtttcctcactcttgatctttgtgcagattgtctatttgccaggattctgatacatatgcaaacacaataattacaatcacatcatatgaatga |
514 |
Q |
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| T |
30730251 |
attgcagtttcctcactcttgatctttgtgcagattgtctatttgccaggattctgatacatatgcaaacacaataattacaatcacatcatatgaatga |
30730152 |
T |
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| Q |
515 |
aaaggtacaaaaatacattcttacataatcaccatcaccactactagctcatgtttcaatcacag |
579 |
Q |
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| T |
30730151 |
aaaggtacaaaaatacattcttacataatcaccatcaccactactagctcatgtttcaatcacag |
30730087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 39029038 - 39028912
Alignment:
| Q |
104 |
taccatctttgaagattttgtcttgggctagggctgcgattctttgcttgatagcactgttatcaacatttagaagcaacctctgatgatccaaatatgc |
203 |
Q |
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| T |
39029038 |
taccatctttgaatagcttgtcttgtgcaagggctgcaattctttgcttgagagcactgttatcaacatttagaagcaagcgttgatgatccaaaaatgc |
39028939 |
T |
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| Q |
204 |
aacccgtggtgacagcactgatacttc |
230 |
Q |
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| T |
39028938 |
aactcttggagatagcactgaaacttc |
39028912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 375 - 469
Target Start/End: Complemental strand, 39028668 - 39028574
Alignment:
| Q |
375 |
acctgtaatgaagtcacacttctctcaagctctgatatgtattgcagtttcctcactcttgatctttgtgcagattgtctatttgccaggattct |
469 |
Q |
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| T |
39028668 |
acctgcaatgaagttacactacgctcaagctctgatatgtattgcagcttcctcacacgtgacctttgtgctgattgcctattcgccaagattct |
39028574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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