View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7399_low_5 (Length: 352)
Name: NF7399_low_5
Description: NF7399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7399_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 337
Target Start/End: Original strand, 48060361 - 48060681
Alignment:
| Q |
17 |
gaaacccattttaacatcatgtgattagtcacatgatccatattagcatgtgttggaaacattatagaaatgtctgagaagtatgggatttgattaagga |
116 |
Q |
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| T |
48060361 |
gaaacccattttaacatcatgtgattagtcacatgatccatattagcatgtgatggaaacattatagaaatgtctgagaagtatgggatttgattaagga |
48060460 |
T |
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| Q |
117 |
tcacatgacaagctccttccattccatgttctactccacaacacaacaaaatgtggcaggtccaataatccattatccatgtaccttccttccctttcct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48060461 |
tcacatgacaagctccttccattccatgttctactccacaacacaacaaaatgtggcaggtccaataatccattatccatgtaccttccttccctttcct |
48060560 |
T |
|
| Q |
217 |
attcctcaaatctgattctttcacacaactattgagcggttgaaaaaatcttaactacattatttcattctttttaaaagagggaaggcaagtttatatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48060561 |
attcctcaaatctgattctttcacacaactattgagcggttgaaaaaatcttaactacattatttcattctttttaaaagagggaaggcaagtttatatt |
48060660 |
T |
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| Q |
317 |
tatgcattacactagtatctt |
337 |
Q |
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||||||||||||||||||||| |
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| T |
48060661 |
tatgcattacactagtatctt |
48060681 |
T |
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