View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_high_13 (Length: 301)

Name: NF7400_high_13
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_high_13
NF7400_high_13
[»] chr8 (13 HSPs)
chr8 (1-92)||(17973616-17973707)
chr8 (1-87)||(25579740-25579826)
chr8 (1-87)||(39837490-39837576)
chr8 (1-87)||(17664568-17664654)
chr8 (1-87)||(30938333-30938419)
chr8 (1-79)||(39845541-39845619)
chr8 (1-82)||(4839715-4839796)
chr8 (1-87)||(1407001-1407087)
chr8 (1-87)||(17683724-17683810)
chr8 (1-78)||(26873541-26873618)
chr8 (1-78)||(26875991-26876068)
chr8 (20-76)||(23090611-23090667)
chr8 (20-76)||(25700273-25700329)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-87)||(121279-121365)
[»] chr6 (17 HSPs)
chr6 (1-87)||(25991901-25991987)
chr6 (2-87)||(25550347-25550432)
chr6 (1-92)||(13825754-13825845)
chr6 (1-87)||(30824457-30824543)
chr6 (1-78)||(23925386-23925463)
chr6 (1-87)||(5004112-5004198)
chr6 (1-87)||(25506469-25506555)
chr6 (1-87)||(33298136-33298221)
chr6 (1-105)||(5994750-5994855)
chr6 (2-81)||(35091610-35091689)
chr6 (1-87)||(11279888-11279974)
chr6 (1-79)||(15391547-15391625)
chr6 (9-77)||(26526640-26526708)
chr6 (218-285)||(20532403-20532470)
chr6 (20-73)||(15140726-15140779)
chr6 (20-73)||(23985047-23985100)
chr6 (20-73)||(28127457-28127510)
[»] chr4 (10 HSPs)
chr4 (1-87)||(12996527-12996613)
chr4 (1-87)||(27343619-27343705)
chr4 (1-87)||(4523608-4523694)
chr4 (1-87)||(8094210-8094296)
chr4 (1-87)||(8103016-8103102)
chr4 (1-78)||(52295655-52295732)
chr4 (1-87)||(21532233-21532318)
chr4 (5-54)||(12402907-12402956)
chr4 (1-73)||(19772241-19772313)
chr4 (20-73)||(19647352-19647405)
[»] scaffold0016 (1 HSPs)
scaffold0016 (4-105)||(23519-23620)
[»] chr2 (21 HSPs)
chr2 (1-105)||(35037907-35038011)
chr2 (1-87)||(14582976-14583062)
chr2 (1-87)||(15944485-15944571)
chr2 (1-87)||(15953000-15953086)
chr2 (1-87)||(35138644-35138730)
chr2 (1-87)||(35146980-35147066)
chr2 (1-87)||(38168285-38168371)
chr2 (1-87)||(41233772-41233858)
chr2 (1-87)||(42565857-42565943)
chr2 (1-87)||(42574481-42574567)
chr2 (4-87)||(20621572-20621655)
chr2 (2-52)||(17687361-17687411)
chr2 (1-78)||(20372251-20372327)
chr2 (4-76)||(18989312-18989384)
chr2 (1-61)||(25483652-25483712)
chr2 (1-61)||(25491258-25491318)
chr2 (1-45)||(44372756-44372800)
chr2 (1-45)||(44388667-44388711)
chr2 (21-75)||(35303808-35303862)
chr2 (20-73)||(27683381-27683434)
chr2 (218-250)||(20372078-20372110)
[»] chr7 (9 HSPs)
chr7 (1-87)||(10439988-10440074)
chr7 (1-81)||(18304326-18304406)
chr7 (1-87)||(4952325-4952411)
chr7 (1-87)||(13831551-13831637)
chr7 (1-87)||(13839582-13839668)
chr7 (1-87)||(12978506-12978592)
chr7 (21-76)||(1955691-1955746)
chr7 (20-73)||(20114066-20114119)
chr7 (20-73)||(38247996-38248049)
[»] chr5 (26 HSPs)
chr5 (1-87)||(20372841-20372927)
chr5 (1-87)||(20398563-20398649)
chr5 (1-105)||(23349986-23350090)
chr5 (1-87)||(29186206-29186292)
chr5 (1-87)||(43597974-43598060)
chr5 (1-87)||(43603466-43603552)
chr5 (1-87)||(43608958-43609044)
chr5 (1-87)||(1728087-1728173)
chr5 (1-87)||(24956774-24956860)
chr5 (1-87)||(24965237-24965323)
chr5 (1-87)||(28843991-28844077)
chr5 (1-87)||(28852601-28852687)
chr5 (1-82)||(31410941-31411022)
chr5 (1-77)||(31421840-31421916)
chr5 (29-75)||(23028007-23028053)
chr5 (28-74)||(23037923-23037969)
chr5 (20-73)||(21988620-21988673)
chr5 (20-73)||(21997264-21997317)
chr5 (20-73)||(23606368-23606421)
chr5 (20-73)||(23635076-23635129)
chr5 (20-73)||(23829022-23829075)
chr5 (20-73)||(23837763-23837816)
chr5 (20-73)||(31550458-31550511)
chr5 (1-61)||(19223606-19223666)
chr5 (20-76)||(21852579-21852635)
chr5 (20-76)||(21869103-21869159)
[»] chr3 (20 HSPs)
chr3 (1-87)||(50824403-50824489)
chr3 (1-87)||(50851371-50851457)
chr3 (2-105)||(14538514-14538618)
chr3 (2-78)||(27341272-27341348)
chr3 (1-87)||(8154572-8154658)
chr3 (1-87)||(41006607-41006693)
chr3 (1-87)||(41015387-41015473)
chr3 (1-92)||(9525357-9525448)
chr3 (1-92)||(9555031-9555122)
chr3 (1-76)||(43470492-43470567)
chr3 (1-87)||(2211290-2211376)
chr3 (1-75)||(17933706-17933780)
chr3 (1-87)||(28470146-28470231)
chr3 (20-73)||(13272670-13272723)
chr3 (20-73)||(4505979-4506032)
chr3 (35-76)||(16288692-16288733)
chr3 (20-73)||(17657630-17657683)
chr3 (20-73)||(27976552-27976605)
chr3 (19-75)||(1477758-1477814)
chr3 (29-73)||(17618130-17618174)
[»] scaffold0156 (1 HSPs)
scaffold0156 (1-92)||(35279-35370)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-87)||(33086-33172)
[»] scaffold0083 (1 HSPs)
scaffold0083 (1-78)||(15864-15941)
[»] scaffold0632 (1 HSPs)
scaffold0632 (2-78)||(4442-4518)
[»] chr1 (14 HSPs)
chr1 (1-87)||(3432818-3432904)
chr1 (2-105)||(41746602-41746706)
chr1 (1-87)||(31540005-31540091)
chr1 (1-87)||(31548574-31548660)
chr1 (1-105)||(32137664-32137768)
chr1 (1-87)||(35103992-35104078)
chr1 (26-75)||(8241438-8241487)
chr1 (213-251)||(28457826-28457864)
chr1 (1-73)||(8579341-8579413)
chr1 (1-75)||(29221429-29221502)
chr1 (20-73)||(12465698-12465751)
chr1 (26-67)||(28457632-28457673)
chr1 (218-250)||(23950396-23950428)
chr1 (218-250)||(28993305-28993337)
[»] scaffold0497 (1 HSPs)
scaffold0497 (1-76)||(11044-11119)
[»] scaffold0173 (1 HSPs)
scaffold0173 (1-105)||(839-943)
[»] scaffold0209 (1 HSPs)
scaffold0209 (1-87)||(12-98)
[»] scaffold0290 (1 HSPs)
scaffold0290 (4-76)||(15760-15832)
[»] scaffold0222 (1 HSPs)
scaffold0222 (5-75)||(20422-20492)
[»] scaffold0170 (1 HSPs)
scaffold0170 (5-76)||(7129-7200)
[»] scaffold0315 (1 HSPs)
scaffold0315 (20-76)||(10595-10651)
[»] scaffold0039 (1 HSPs)
scaffold0039 (1-41)||(40807-40847)
[»] scaffold0455 (1 HSPs)
scaffold0455 (20-73)||(6056-6109)
[»] scaffold0047 (1 HSPs)
scaffold0047 (20-73)||(59736-59789)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 17973616 - 17973707
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 92  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| |||| ||||    
T  17973616 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttttattccgagtcgggc 17973707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25579826 - 25579740
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  25579826 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 25579740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 39837576 - 39837490
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  39837576 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 39837490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17664654 - 17664568
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |  | ||| | |||||||||||| |||||||||||||| ||||    
T  17664654 gtatttttagagtcgggaattttcatcgtttcagacgaaattttgacaaagaagttactttgaagtacctcattttttattccgagt 17664568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 30938333 - 30938419
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  30938333 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 30938419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 39845619 - 39845541
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttta 79  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||    
T  39845619 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcatttttta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4839796 - 4839715
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattc 82  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  | ||| | |||||||||||| ||||||||| ||||    
T  4839796 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaagttactttgaagtacctcatttttgattc 4839715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1407087 - 1407001
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  1407087 gtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 1407001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17683810 - 17683724
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||| |||||||||||||| |||||||||||||||||| |  | ||| | |||||||||||| |||||||||||||| ||||    
T  17683810 gtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaaagaagttactttgaagtacctcattttttattccgagt 17683724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26873618 - 26873541
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 78  Q
    |||||| ||| ||||| ||||||| ||||||||||||||||||||  | ||||| |||||| ||||| || |||||||    
T  26873618 gtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttaaagtaccttatttttt 26873541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 26876068 - 26875991
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 78  Q
    |||||||||| ||||| ||||||  ||||||||||||||||||||  | ||||| |||||| || || ||||||||||    
T  26876068 gtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaaagaggttactttaaaatacctcatttttt 26875991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 23090611 - 23090667
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    |||| ||| ||| ||||||||||| |  |||||||||||||||||||| ||||||||    
T  23090611 ttttaatcattttagacgaaatttggacagagaggatactttgaagtacctcatttt 23090667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 25700273 - 25700329
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  25700273 ttttaatcatttcaaacgaaatttcggaagggaggttactttgaagtacctcatttt 25700329  T

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Target: scaffold0002 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 121279 - 121365
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||| ||||    
T  121279 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtagagaggttactttgaagtaaatcatttttgattccgagt 121365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 25991901 - 25991987
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  25991901 gtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagagaggttactttgaagtacctcattttttattcagagt 25991987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 25550347 - 25550432
Alignment:
Q  2 tatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||||||||||||| |||||||| ||||||||| || ||||||| |||||||||||| |||||||||||||| ||||    
T  25550347 tatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggcagagaggttactttgaagtacctcattttttattccgagt 25550432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 13825754 - 13825845
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 92  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||  ||||||| |||||||||||| ||||||||| |||| |||| ||||    
T  13825754 gtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcatttttgattccgagtcgggc 13825845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 30824543 - 30824457
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| ||||||||| |||| ||||    
T  30824543 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcatttttgattccgagt 30824457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 23925386 - 23925463
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 78  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||||| | |||||||||||| ||||||||||    
T  23925386 gtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtagagatgttactttgaagtacctcatttttt 23925463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5004112 - 5004198
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  5004112 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 5004198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 25506555 - 25506469
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||| |||||||||||||| ||||||| |||||| || || ||||||||| |||| ||||    
T  25506555 gtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcagagaggttactttaaaatacctcatttttgattccgagt 25506469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 33298136 - 33298221
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  | ||| | |||||||||||| |||||||||||||| ||||    
T  33298136 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaaaga-gttactttgaagtacctcattttttattccgagt 33298221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 5994750 - 5994855
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt-attcggagttgggctctgttc 99  Q
    |||||||||||||||| ||||||| ||||||||||| |||||| || | ||||| |||||||||||| |||||||||| |||| |||| |||| || |||    
T  5994750 gtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggcaaagaggttactttgaagtacctcattttttgattccgagtcgggccctcttc 5994849  T
Q  100 cctctt 105  Q
    ||||||    
T  5994850 cctctt 5994855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 35091689 - 35091610
Alignment:
Q  2 tatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttatt 81  Q
    ||||||||||||||| ||||||| |||||||||||||||||| || |  |||| |||||||||||| |||||||||||||    
T  35091689 tatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttttatt 35091610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11279888 - 11279974
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  11279888 gtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 11279974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 15391625 - 15391547
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttta 79  Q
    |||||||||||| | ||||||||| ||||||||||||||||||||  | ||||| |||||||||||| |||||||||||    
T  15391625 gtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctcatttttta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 26526708 - 26526640
Alignment:
Q  9 aaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 77  Q
    |||||||||||||||| |||||||||||||||| |||| |||| || ||||||||| || |||||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcattttt 26526640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 285
Target Start/End: Complemental strand, 20532470 - 20532403
Alignment:
Q  218 gtcaatgagtccgaaaatttcagcaagggtccaatttcnnnnnnnncatttcttctccgtacgccaca 285  Q
    |||||| |||||||||||||||||||||||||| |||         ||||||||||||||||||||||    
T  20532470 gtcaataagtccgaaaatttcagcaagggtccatttttctttttttcatttcttctccgtacgccaca 20532403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 15140726 - 15140779
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  15140726 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 15140779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 23985100 - 23985047
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23985100 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23985047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 28127510 - 28127457
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  28127510 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 28127457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12996527 - 12996613
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||    
T  12996527 gtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggtagagaggttactttgaagtacctcattttttattccgagt 12996613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 27343705 - 27343619
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||||   ||||||| |||||||||||| |||||||||||||| ||||    
T  27343705 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacagagaggttactttgaagtacctcattttttattccgagt 27343619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4523694 - 4523608
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  4523694 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 4523608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8094296 - 8094210
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| ||||||||| |||| ||||    
T  8094296 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcatttttgattccgagt 8094210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8103102 - 8103016
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| ||||||||| |||| ||||    
T  8103102 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcatttttgattccgagt 8103016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 52295655 - 52295732
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 78  Q
    |||||||||||||||||||||||| ||||||||||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  52295655 gtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcagagagattactttgaagtacctcatttttt 52295732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 21532318 - 21532233
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||  | | ||  |||||||||||| |||||||||||||| ||||    
T  21532318 gtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgaca-aaagattactttgaagtacctcattttttattctgagt 21532233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 12402907 - 12402956
Alignment:
Q  5 ttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagagg 54  Q
    |||||||||| ||||||||| ||||||||||||||||||||| |||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttcggcagagagg 12402956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 19772241 - 19772313
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    ||||||| ||||||| |  |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19772241 gtattttaaaagtcgcgttttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19772313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 19647405 - 19647352
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  19647405 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 19647352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 23519 - 23620
Alignment:
Q  4 tttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttccctc 103  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||||| |||| |||| |||| || |||||||    
T  23519 tttttaaagtcgggaattttcatcatttctgacgaaatttcggtagagaggttactttgaagtacctcatttttgattccgagtcgggccctcttccctc 23618  T
Q  104 tt 105  Q
    ||    
T  23619 tt 23620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 35037907 - 35038011
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| || |||||||||||||| ||||  ||| || ||||    
T  35037907 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttttattccgagtcaggccctcttcc 35038006  T
Q  101 ctctt 105  Q
    |||||    
T  35038007 ctctt 35038011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 14582976 - 14583062
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  14582976 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 14583062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15944571 - 15944485
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  15944571 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 15944485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15953086 - 15953000
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  15953086 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 15953000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 35138644 - 35138730
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  35138644 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 35138730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 35146980 - 35147066
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  35146980 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 35147066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 38168371 - 38168285
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  38168371 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 38168285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 41233858 - 41233772
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  41233858 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 41233772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 42565943 - 42565857
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  42565943 gtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 42565857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 42574567 - 42574481
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  42574567 gtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 42574481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 20621572 - 20621655
Alignment:
Q  4 tttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||  | ||| | |||||||||||| |||||||||||||| ||||    
T  20621572 tttttgaagtcgggaattttcgtcgtttcagacaaaatttcgacaaagatgttactttgaagtacctcattttttattctgagt 20621655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 17687411 - 17687361
Alignment:
Q  2 tatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagaga 52  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  17687411 tatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcagaga 17687361  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 20372327 - 20372251
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 78  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||  | | ||| |||||||||||| ||||||||||    
T  20372327 gtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgaca-aaaggttactttgaagtacctcatttttt 20372251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 18989384 - 18989312
Alignment:
Q  4 tttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    ||||||||| ||||||||||  |||  |||||||||||| ||||||||||| |||||| ||||| ||||||||    
T  18989384 tttttaaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25483652 - 25483712
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatacttt 61  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||  ||||||| ||||||    
T  25483652 gtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacagagaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25491258 - 25491318
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatacttt 61  Q
    ||||||||||||||| |||||||| |||||||||||||||| |||  ||||||| ||||||    
T  25491258 gtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacagagaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44372756 - 44372800
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcg 45  Q
    |||||||||||||||||||||||| |||||| |||||||||||||    
T  44372756 gtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcg 44372800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 44388667 - 44388711
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcg 45  Q
    |||||||||||||||||||||||| |||||| |||||||||||||    
T  44388667 gtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcg 44388711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 35303808 - 35303862
Alignment:
Q  21 tttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 75  Q
    |||| ||||||||||||||||||||| ||||||| || ||||||||| |||||||    
T  35303808 tttcgtcgtttcagacgaaatttcggcagagaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 27683434 - 27683381
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27683434 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27683381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 20372110 - 20372078
Alignment:
Q  218 gtcaatgagtccgaaaatttcagcaagggtcca 250  Q
    |||||| ||||||||||||||||||||||||||    
T  20372110 gtcaataagtccgaaaatttcagcaagggtcca 20372078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 10439988 - 10440074
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||| ||||| |||||||||||||| ||||    
T  10439988 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcagagaggttactttaaagtacctcattttttattccgagt 10440074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 18304406 - 18304326
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttatt 81  Q
    |||||||||||||||||||||||| |||||||||||||||||| || | ||||| |||||||||||| |||||||||||||    
T  18304406 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttatt 18304326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 4952411 - 4952325
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||| ||||||| |||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  4952411 gtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 4952325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13831551 - 13831637
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  13831551 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 13831637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13839582 - 13839668
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  13839582 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 13839668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 12978506 - 12978592
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  12978506 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 12978592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  21 tttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    |||| ||||||||||| ||||||||| ||||||| |||||||||| | ||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 20114119 - 20114066
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  20114119 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 20114066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 38247996 - 38248049
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  38247996 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 38248049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20372927 - 20372841
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||| ||||    
T  20372927 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcattttttattccgagt 20372841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 20398649 - 20398563
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||| ||||    
T  20398649 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcattttttattccgagt 20398563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 23350090 - 23349986
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttcc 100  Q
    ||||||||||||||||||||| || || |||||||||||||||||| | ||||| |||||||||||| |||||||||||||| |||| |||| || |||     
T  23350090 gtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggcaaagaggttactttgaagtacctcattttttattccgagtcgggccctcttct 23349991  T
Q  101 ctctt 105  Q
    |||||    
T  23349990 ctctt 23349986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 29186292 - 29186206
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||  |||||||||||||| ||||    
T  29186292 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtgcctcattttttattccgagt 29186206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43598060 - 43597974
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  43598060 gtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 43597974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43603552 - 43603466
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  43603552 gtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 43603466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 43609044 - 43608958
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||||||||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  43609044 gtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 43608958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 1728173 - 1728087
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  1728173 gtatttttaaagtcgggaattttcgccgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 1728087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24956860 - 24956774
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  24956860 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 24956774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 24965323 - 24965237
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  24965323 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 24965237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28843991 - 28844077
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  28843991 gtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 28844077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 28852601 - 28852687
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  28852601 gtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 28852687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31410941 - 31411022
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattc 82  Q
    |||||||||||||  ||||||||| |||||| | |||||||||||  | ||||| |||||||||||| ||||||||||||||    
T  31410941 gtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaaagaggttactttgaagtacctcattttttattc 31411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31421840 - 31421916
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttt 77  Q
    |||||||| ||||||| ||||||| ||||||||||| ||||||||  | ||| | |||||||||||| |||||||||    
T  31421840 gtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaaagatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  29 tttcagacgaaatttcggtagagaggatactttgaagtaactcattt 75  Q
    |||||||||||||||||| ||||||| |||||||||||| |||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 74
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  28 gtttcagacgaaatttcggtagagaggatactttgaagtaactcatt 74  Q
    ||||||||||||||||||| ||||||| |||||||||||| ||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 21988673 - 21988620
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21988673 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 21997317 - 21997264
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  21997317 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 21997264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 23606421 - 23606368
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23606421 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23606368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 23635076 - 23635129
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23635076 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23635129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 23829075 - 23829022
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23829075 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23829022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 23837816 - 23837763
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  23837816 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 23837763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 31550511 - 31550458
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| ||||| |||||||||||||| |||||    
T  31550511 ttttaatcatttcagacaaaatttcggcagagatgatactttgaagtacctcat 31550458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19223606 - 19223666
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatacttt 61  Q
    ||||||||||||||| ||||| || |||||||||| ||||| |||  ||||||| ||||||    
T  19223606 gtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacagagaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 21852635 - 21852579
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21852635 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21852579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 21869159 - 21869103
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    |||| ||| ||||| |||||||||||| || |||| |||||||||||| ||||||||    
T  21869159 ttttaatcatttcaaacgaaatttcggcagggaggttactttgaagtacctcatttt 21869103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 50824403 - 50824489
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||    
T  50824403 gtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttttattccgagt 50824489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 50851457 - 50851371
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||| ||||    
T  50851457 gtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttttattccgagt 50851371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 14538618 - 14538514
Alignment:
Q  2 tatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg-tagagaggatactttgaagtaactcattttttattcggagttgggctctgttcc 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||  | ||||| |||||||||||| |||||||||||||| |||| |||| || |||     
T  14538618 tatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaaaagaggttactttgaagtacctcattttttattccgagtcgggccctcttct 14538519  T
Q  101 ctctt 105  Q
    |||||    
T  14538518 ctctt 14538514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 27341348 - 27341272
Alignment:
Q  2 tatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 78  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||    
T  27341348 tatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcagaaaggttactttgaagtacctcatttttt 27341272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8154658 - 8154572
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  8154658 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 8154572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41006607 - 41006693
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  41006607 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 41006693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41015387 - 41015473
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  41015387 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 41015473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 9525448 - 9525357
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 92  Q
    |||||||||||||||||||||||| | |||| |||||||||||||| ||| ||| |||||| || || |||||||||||||| |||| ||||    
T  9525448 gtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcagaaaggttactttaaaatacctcattttttattccgagtcgggc 9525357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 9555122 - 9555031
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 92  Q
    |||||||||||||||||||||||| | |||| |||||||||||||| ||| ||| |||||| || || |||||||||||||| |||| ||||    
T  9555122 gtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcagaaaggttactttaaaatacctcattttttattccgagtcgggc 9555031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 43470567 - 43470492
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    |||||||||||| || |||||||  ||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  43470567 gtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttt 43470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2211290 - 2211376
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||| ||||||||| |||||| |||||||||||||| | ||||| || ||| || || |||||||||||||| ||||    
T  2211290 gtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaaagagggtattttaaaatacctcattttttattccgagt 2211376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 17933706 - 17933780
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 75  Q
    |||||||||||||||| ||||||| |  ||||||||||||||||    |||||| |||||||||||| |||||||    
T  17933706 gtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcggagaggttactttgaagtacctcattt 17933780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 28470231 - 28470146
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||  | | ||  |||| ||||||| |||||||||||||| ||||    
T  28470231 gtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgaca-aaagattactatgaagtacctcattttttattctgagt 28470146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 13272670 - 13272723
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| |||||||||||||||||||| |||||    
T  13272670 ttttaatcatttcagacaaaatttcggcagagaggatactttgaagtacctcat 13272723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 4506032 - 4505979
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  4506032 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 4505979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  35 acgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    |||||||||||| ||||||| |||||||||||| ||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 17657630 - 17657683
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17657630 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 17657683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 27976552 - 27976605
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  27976552 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 27976605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 1477758 - 1477814
Alignment:
Q  19 attttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 75  Q
    ||||| ||| |||||||| ||||||||| || |||| |||||||||||| |||||||    
T  1477758 atttttatcatttcagacaaaatttcggcagggaggttactttgaagtacctcattt 1477814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 17618174 - 17618130
Alignment:
Q  29 tttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||||||| ||||||||| || ||||||||||||||||| |||||    
T  17618174 tttcagacaaaatttcggcagggaggatactttgaagtacctcat 17618130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 35370 - 35279
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggc 92  Q
    |||||||||||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||| |||||||||||||| |||| ||||    
T  35370 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctcattttttattccgagtcgggc 35279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 33086 - 33172
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| | ||||| |||||| ||||| |||||||||||||| ||||    
T  33086 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaaagaggttactttaaagtacctcattttttattccgagt 33172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 15864 - 15941
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 78  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||    
T  15864 gtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttttt 15941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 4442 - 4518
Alignment:
Q  2 tatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttttt 78  Q
    ||||||||||||||| ||||||||||||||||||||||||||||  ||||||| |||||||||||| ||||||||||    
T  4442 tatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacagagaggttactttgaagtacctcatttttt 4518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3432904 - 3432818
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| |  | ||||| |||||||||||| |||||||||||||| ||||    
T  3432904 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagt 3432818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 105
Target Start/End: Complemental strand, 41746706 - 41746602
Alignment:
Q  2 tatttttaaagtcgggaattttcatcgtttcagacgaaatttcgg-tagagaggatactttgaagtaactcattttttattcggagttgggctctgttcc 100  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||  | ||||| |||||||||||| |||||||||||||| |||| |||| || |||     
T  41746706 tatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaaaagaggttactttgaagtacctcattttttattccgagtcgggccctcttct 41746607  T
Q  101 ctctt 105  Q
    |||||    
T  41746606 ctctt 41746602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31540005 - 31540091
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  31540005 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 31540091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 31548574 - 31548660
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    |||||||||||||||||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  31548574 gtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 31548660  T

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Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32137768 - 32137664
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttcc 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||   | | | | |||||||||||| |||||||||||||| |||| |||| || |||     
T  32137768 gtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaataagttactttgaagtacctcattttttattccgagtcgggccctcttct 32137669  T
Q  101 ctctt 105  Q
    |||||    
T  32137668 ctctt 32137664  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 35104078 - 35103992
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||| |||||||||| |||||||||||||||||| || |  |||| |||||||||||| ||||||||| |||| ||||    
T  35104078 gtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcatttttgattccgagt 35103992  T

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Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 75
Target Start/End: Complemental strand, 8241487 - 8241438
Alignment:
Q  26 tcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 75  Q
    ||||||||||||||||||||||||||||| |||||| ||||| |||||||    
T  8241487 tcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 28457826 - 28457864
Alignment:
Q  213 ataatgtcaatgagtccgaaaatttcagcaagggtccaa 251  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  28457826 ataatgtcaatgagtccgaaaatttcagcaggggtccaa 28457864  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 8579341 - 8579413
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    ||||||| ||||||| |  |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  8579341 gtattttaaaagtcgcgttttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 8579413  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29221502 - 29221429
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 75  Q
    |||||||||||||||| |||||||    |||||||||||||||||| ||||||| || |||||| || |||||||    
T  29221502 gtatttttaaagtcggaaattttcgctatttcagacgaaatttcggcagagagg-tattttgaaatacctcattt 29221429  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 12465751 - 12465698
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  12465751 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 12465698  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 28457632 - 28457673
Alignment:
Q  26 tcgtttcagacgaaatttcggtagagaggatactttgaagta 67  Q
    ||||||||||||||||||||  ||||||| ||||||||||||    
T  28457632 tcgtttcagacgaaatttcgacagagaggttactttgaagta 28457673  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 23950396 - 23950428
Alignment:
Q  218 gtcaatgagtccgaaaatttcagcaagggtcca 250  Q
    |||||| ||||||||||||||||||||||||||    
T  23950396 gtcaataagtccgaaaatttcagcaagggtcca 23950428  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 28993337 - 28993305
Alignment:
Q  218 gtcaatgagtccgaaaatttcagcaagggtcca 250  Q
    |||||| ||||||||||||||||||||||||||    
T  28993337 gtcaataagtccgaaaatttcagcaagggtcca 28993305  T

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Target: scaffold0497 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 11044 - 11119
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    ||||| |||||||||| ||||||| ||||||||||||||||||||| ||||||| |||||||||||| ||||||||    
T  11044 gtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttt 11119  T

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Target: scaffold0173 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 943 - 839
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagttgggctctgttcc 100  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||| ||| ||| ||||||||| || ||||||||| |||| |||| |||| || |||     
T  943 gtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggcagaaaggttactttgaaatacctcatttttgattccgagtcgggccctcttct 844  T
Q  101 ctctt 105  Q
    |||||    
T  843 ctctt 839  T

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Target: scaffold0209 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 98 - 12
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattttttattcggagt 87  Q
    ||||||||||||| | ||||||||  ||||||||||||||||| || | ||||| |||||||||||| |||||||||||||| ||||    
T  98 gtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttttattccgagt 12  T

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Target: scaffold0290 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 76
Target Start/End: Complemental strand, 15832 - 15760
Alignment:
Q  4 tttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    ||||||||| | ||||||||| ||| ||||||||||||| ||||||| ||| |||||||||||| ||||||||    
T  15832 tttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

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Target: scaffold0222 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 20492 - 20422
Alignment:
Q  5 ttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcattt 75  Q
    |||||||| || |||||||| | ||||||||||||||||||| ||||||| ||||||| |||| |||||||    
T  20492 ttttaaagccgagaattttcgttgtttcagacgaaatttcggcagagaggttactttggagtacctcattt 20422  T

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Target: scaffold0170 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 7200 - 7129
Alignment:
Q  5 ttttaaagtcgggaattttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    |||||||| || |||||||| | ||||||||||||||||||| ||  ||| |||||||||||| ||||||||    
T  7200 ttttaaagccgagaattttcgttgtttcagacgaaatttcgggaggaaggttactttgaagtacctcatttt 7129  T

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Target: scaffold0315 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcatttt 76  Q
    ||||| ||| ||||||||||||||||| | ||||| |||||||||||| ||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

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Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40847 - 40807
Alignment:
Q  1 gtatttttaaagtcgggaattttcatcgtttcagacgaaat 41  Q
    ||||||||||||||| | |||||||||||||||||||||||    
T  40847 gtatttttaaagtcgagcattttcatcgtttcagacgaaat 40807  T

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Target: scaffold0455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 6109 - 6056
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  6109 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 6056  T

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Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 59736 - 59789
Alignment:
Q  20 ttttcatcgtttcagacgaaatttcggtagagaggatactttgaagtaactcat 73  Q
    |||| ||| |||||||| ||||||||| || ||||||||||||||||| |||||    
T  59736 ttttaatcatttcagacaaaatttcggcagggaggatactttgaagtacctcat 59789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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