View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7400_high_14 (Length: 296)

Name: NF7400_high_14
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7400_high_14
NF7400_high_14
[»] chr5 (3 HSPs)
chr5 (32-178)||(33432924-33433070)
chr5 (238-289)||(33433209-33433260)
chr5 (32-135)||(33433812-33433915)
[»] chr3 (3 HSPs)
chr3 (31-178)||(19251702-19251849)
chr3 (31-135)||(19252590-19252694)
chr3 (238-289)||(19251988-19252039)
[»] chr7 (1 HSPs)
chr7 (32-108)||(25442213-25442289)
[»] chr4 (2 HSPs)
chr4 (43-158)||(12826112-12826227)
chr4 (43-116)||(12827406-12827479)
[»] chr6 (1 HSPs)
chr6 (43-116)||(34991999-34992072)
[»] chr8 (1 HSPs)
chr8 (238-289)||(36826231-36826282)


Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 32 - 178
Target Start/End: Original strand, 33432924 - 33433070
Alignment:
Q  32 gagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaat 131  Q
    |||||||| ||||||||||||||||||| | |||||||||||| ||||||||||||||||| | | ||||||||||| |||||||||| | |||||||||    
T  33432924 gagttcatctttgctccatttacacttgctccatttacccctgctcagtgcatagatgagtgacacgtggcaaaaataaattcaagggctgggattaaat 33433023  T
Q  132 ggtttaaaataggtattctttgatacagcaatacacatgttccatct 178  Q
    ||||||||||||  ||||||||||||| |||||||||||||||||||    
T  33433024 ggtttaaaatagacattctttgatacaccaatacacatgttccatct 33433070  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 33433209 - 33433260
Alignment:
Q  238 atcaagtaacaaaatcttttttgctgtaacaattgcttttataaactccaaa 289  Q
    ||||||||||||||||| |||   ||||||||||||||||||||||||||||    
T  33433209 atcaagtaacaaaatctctttcaatgtaacaattgcttttataaactccaaa 33433260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 135
Target Start/End: Complemental strand, 33433915 - 33433812
Alignment:
Q  32 gagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaat 131  Q
    |||| ||| |||||||||||||| | || | ||||||||||| ||||||||||| |||||| | | ||| || |||| |||||||||| |  ||||||||    
T  33433915 gagtccatctttgctccatttacgcctgctccatttacccctattcagtgcatatatgagtgacacgtgacagaaataaattcaagggctgtgattaaat 33433816  T
Q  132 ggtt 135  Q
    ||||    
T  33433815 ggtt 33433812  T

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Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 178
Target Start/End: Original strand, 19251702 - 19251849
Alignment:
Q  31 tgagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaa 130  Q
    ||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||| | | ||||||||||| ||||| |||  | ||||||||    
T  19251702 tgagttcatctttactccatttacacttgctccatttacccctgttcagtgcatagatgagtgacacgtggcaaaaataaattccaggcctgggattaaa 19251801  T
Q  131 tggtttaaaataggtattctttgatacagcaatacacatgttccatct 178  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||    
T  19251802 tggtttaaaatagacattctttgatacaacaatacacatgttccatct 19251849  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 135
Target Start/End: Complemental strand, 19252694 - 19252590
Alignment:
Q  31 tgagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaa 130  Q
    ||||| ||| |||||||||||||| | || | ||||||||||||||||||||||| |||||| | | ||| || |||| ||||||||||||  |||||||    
T  19252694 tgagtccatctttgctccatttacgcctgctccatttacccctgttcagtgcatatatgagtgacacgtgacagaaataaattcaagggttgtgattaaa 19252595  T
Q  131 tggtt 135  Q
    |||||    
T  19252594 tggtt 19252590  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 19251988 - 19252039
Alignment:
Q  238 atcaagtaacaaaatcttttttgctgtaacaattgcttttataaactccaaa 289  Q
    ||||||||||||||||| |||   ||||||| ||||||||||||||||||||    
T  19251988 atcaagtaacaaaatctctttcaatgtaacagttgcttttataaactccaaa 19252039  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 25442289 - 25442213
Alignment:
Q  32 gagttcatttttgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaat 108  Q
    |||||||| | ||||||||||||||||| | ||||||||||||||||| | |||||||||| | |||||||||||||    
T  25442289 gagttcatctatgctccatttacacttgctccatttacccctgttcagggtatagatgagtgacatgtggcaaaaat 25442213  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 12826112 - 12826227
Alignment:
Q  43 tgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaagggttaggattaaatggtttaaaata 142  Q
    |||||||||||  |||  | |||||||||||||||| ||| ||||||||| | |||||||||||   || | || |||| ||||| ||||||||||||||    
T  12826112 tgctccatttagccttcctccatttacccctgttcaatgcctagatgagtgacatgtggcaaaacaaaaattaacggtttggattgaatggtttaaaata 12826211  T
Q  143 ggtattctttgataca 158  Q
    || ||| | |||||||    
T  12826212 ggcattttgtgataca 12826227  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 12827479 - 12827406
Alignment:
Q  43 tgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaa 116  Q
    |||||||||||  |||  | |||||||||||||| | ||||||||||||| | ||||||||||||  |||||||    
T  12827479 tgctccatttagccttcctccatttacccctgtttaatgcatagatgagtgacatgtggcaaaaaaaaattcaa 12827406  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 34992072 - 34991999
Alignment:
Q  43 tgctccatttacacttgtttcatttacccctgttcagtgcatagatgagtaatatgtggcaaaaattaattcaa 116  Q
    |||||||||||  |||  | |||||||||||||||| ||||||||||||| | ||||||||||||  |||||||    
T  34992072 tgctccatttagccttcctccatttacccctgttcaatgcatagatgagtgacatgtggcaaaaaacaattcaa 34991999  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 36826231 - 36826282
Alignment:
Q  238 atcaagtaacaaaatcttttttgctgtaacaattgcttttataaactccaaa 289  Q
    |||||| || ||||||| ||  ||||||||||||||||||||||||||||||    
T  36826231 atcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaa 36826282  T

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