View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_high_2 (Length: 670)
Name: NF7400_high_2
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 22517219 - 22517659
Alignment:
| Q |
13 |
atcattccactttggtcaccagaaacaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacaccacttaaagaatgatcaattttactct |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22517219 |
atcattccactttggtcaccagaaacaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacaccacttaaagaatgatcatttttactct |
22517318 |
T |
|
| Q |
113 |
gctgctttaattgcaaaactgtgatgaagaaggggcctgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatgtt |
212 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22517319 |
gctgctttaattgcaaacctgtgatgaagaagggacctgatgcatcccaaaaagttatgcctccattatggtgtccagttatgtacaagtttttgatgtt |
22517418 |
T |
|
| Q |
213 |
tgaaaatccagagaagttggtagaattcaaattaatcccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgtaa |
312 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||| |
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| T |
22517419 |
tgaaaatccagagaagttggtagaattcaagttaatcccacctttgtggtttgtttcaattgaaacaagttgtggatgatttttgatcatctgactgtaa |
22517518 |
T |
|
| Q |
313 |
tactcatctgcagaataaaacacaccggtgttgttggagatgaatatttctatggtggtgatgcttgaataaacaaatggtatcctcaccataatttcct |
412 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22517519 |
tactcatctgcagaataaaacacaccggtgttgttggagatgttcttttctatggtggtgatgcttgaataaacaaatggtatcctcaccataatttcct |
22517618 |
T |
|
| Q |
413 |
ttggtaatgaggaagttgacttagattggcctctcaattga |
453 |
Q |
| |
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||||||| |||| |||||||||||||||||||||||||||| |
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| T |
22517619 |
ttggtaaggagggagttgacttagattggcctctcaattga |
22517659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 450 - 655
Target Start/End: Complemental strand, 37191548 - 37191342
Alignment:
| Q |
450 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaa |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
37191548 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacgacggagccattgtacacggcaatgagaacaacgaattcgaaacataa |
37191449 |
T |
|
| Q |
550 |
aattgtgggagaaacgacagcgg-catcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtgg |
648 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
37191448 |
aattgtgggagaaacgacagcggaaatcaatccatggggatcgaaacatttgagacagtcgaagcttagcggaactgattgtgcaaacacattgaagtgg |
37191349 |
T |
|
| Q |
649 |
ttaggtg |
655 |
Q |
| |
|
||||||| |
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|
| T |
37191348 |
ttaggtg |
37191342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 450 - 652
Target Start/End: Original strand, 22517893 - 22518095
Alignment:
| Q |
450 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaaagctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaacagaa |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
22517893 |
ttgagtgtatagccgagcatcataaaaactccaccattcaaatgctgcccacggcggagccattgtacacggcaatgagaacaacgaatttgaaatagaa |
22517992 |
T |
|
| Q |
550 |
aattgtgggagaaacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggt |
649 |
Q |
| |
|
|||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||| | |||||||| |
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|
| T |
22517993 |
aattgtgggaaaaacgaaagcggtatcgatccaccgggatcgaaacatttgagacagtcgaagcttaaaggaattgattgtgcaaacacttggaagtggt |
22518092 |
T |
|
| Q |
650 |
tag |
652 |
Q |
| |
|
||| |
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|
| T |
22518093 |
tag |
22518095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 111 - 316
Target Start/End: Original strand, 9710354 - 9710559
Alignment:
| Q |
111 |
ctgctgctttaattgcaaaactgtgatgaagaaggggcctgatgcatcccaaaaagttatggctccattatggtgtccagttatgtacaagtttttgatg |
210 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
9710354 |
ctgctgctttaattgcaaaactgggatgaagaagggacatgatgcatcccaaaatgttatggctccattatggtgtccagttatgtacaagtttttaatg |
9710453 |
T |
|
| Q |
211 |
tttgaaaatccagagaagttggtagaattcaaattaatcccacctttgtggtttgtttcaattgaaataagttgtggatgattttttatcatctgattgt |
310 |
Q |
| |
|
||||||||||||| |||||||| |||| ||| |||| |||| ||||||| ||||||||||||| |||||| ||||||| | |||| ||||| ||| | | |
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|
| T |
9710454 |
tttgaaaatccagtgaagttggcagaactcaggttaagcccatctttgtgatttgtttcaattggaataagctgtggataacttttgatcatttgactat |
9710553 |
T |
|
| Q |
311 |
aatact |
316 |
Q |
| |
|
|||||| |
|
|
| T |
9710554 |
aatact |
9710559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 9709941 - 9710040
Alignment:
| Q |
15 |
cattccactttggtcaccagaaacaaggcgaagagagttgatgtcaaaatataatactgtcaagggaacaccacttaaagaatgatcaattttactctgc |
114 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||| ||||||| || |||||||||||||| |||||| ||| ||||||| |
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| T |
9709941 |
cattccactctggtcaccagaaaccaggagaagagacttgatgtcaaaatataattctgtcaatggtacaccacttaaagattgatcattttcactctgc |
9710040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 562 - 655
Target Start/End: Original strand, 13885153 - 13885246
Alignment:
| Q |
562 |
aacgacagcggcatcaatccaccgggatcgaaacatttgagacagtcaaagcttaacggaactgattgtgcaaacacattgaagtggttaggtg |
655 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
13885153 |
aacgacagcggcatcgatccaccgggatcgaaacatttgagacagtcgaagcttaacagaactgattgtgcaaacacattgaagtggttaggtg |
13885246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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