View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_high_20 (Length: 250)
Name: NF7400_high_20
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 50375270 - 50375017
Alignment:
| Q |
1 |
ttgaacatttttgtataatcaactcatctaaattcaagaaaaatgttaataagtgttttaaagacattgtttaaagaattaaaa-aggtaatttttgcat |
99 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||| ||||||||| ||||||||||| ||| |
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| T |
50375270 |
ttgaacatttttgtataatcaactcatctaaaatcaagaaaaatgctaataagtgttttaatgacattgtttaaggaattaaaagaggtaatttttacat |
50375171 |
T |
|
| Q |
100 |
agataaataatgtaattattactttgataatagtttgacttgt--------------atttttaaaataaaattttaaattaattacctaagagtggtgg |
185 |
Q |
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| T |
50375170 |
agataaataatgtaattattactttgataatagtttgacttgtatctgcaaaacaaaatttctaatataaaattttaaattaattacctaagagtggtgg |
50375071 |
T |
|
| Q |
186 |
tgcttgcaaagagggcggagagtcttcaaggtggtggcaactttttacgtaact |
239 |
Q |
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| T |
50375070 |
tgcttgcaaagggggtggagagtcttcaaggtggtggcaactttttacgtaact |
50375017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 17073461 - 17073406
Alignment:
| Q |
104 |
aaataatgtaattattactttgataatagtttgacttgtatttttaaaataaaattt |
160 |
Q |
| |
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| T |
17073461 |
aaattatgtaattattactttggcaatagtt-gacttgtattttgaagataaaattt |
17073406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 54259908 - 54260029
Alignment:
| Q |
40 |
aaaatgttaataagtgttttaaagacattgtttaaagaattaaaaagg-taatttttgcatagataaataatgtaattattactttgataatagtttgac |
138 |
Q |
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| T |
54259908 |
aaaatgttaataagtgtctttaagatattgtttaaacaactaaaagtgataatttttgcgt-gaaaagtaatgtaattattacttttacactcgtttgac |
54260006 |
T |
|
| Q |
139 |
ttgtatttttaaaataaaatttt |
161 |
Q |
| |
|
|| |||||| || |||||||||| |
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|
| T |
54260007 |
ttatattttcaagataaaatttt |
54260029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 14599487 - 14599545
Alignment:
| Q |
108 |
aatgtaattattactttgataatagtttgacttgtatttttaaaataaaattttaaatt |
166 |
Q |
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|
| T |
14599487 |
aatgtaattattactttaaaactactttgacttatatttttaaaataaaattttcaatt |
14599545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 126
Target Start/End: Original strand, 33167955 - 33167992
Alignment:
| Q |
88 |
taatttttgcatagataaataatgtaattattactttga |
126 |
Q |
| |
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| T |
33167955 |
taatttttgcataga-aaataatgtaattattactttga |
33167992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 31643694 - 31643735
Alignment:
| Q |
43 |
atgttaataagtgttttaaagacattgtttaaagaattaaaa |
84 |
Q |
| |
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||||||| || ||||||||||||||||||||| ||||||||| |
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|
| T |
31643694 |
atgttaacaactgttttaaagacattgtttaaggaattaaaa |
31643735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Complemental strand, 9431619 - 9431571
Alignment:
| Q |
36 |
aagaaaaatgttaataagtgttttaaagacattgtttaaagaattaaaa |
84 |
Q |
| |
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|||||||||||||| ||||||||||||| |||||||||| | |||||| |
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| T |
9431619 |
aagaaaaatgttaacaagtgttttaaaggtattgtttaaatatttaaaa |
9431571 |
T |
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