View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7400_high_24 (Length: 244)
Name: NF7400_high_24
Description: NF7400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7400_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 25495100 - 25494890
Alignment:
| Q |
16 |
tgtgccagataccaacagagacagttgataggctcaggaagaagatatatgaatatcttcttacacatgttgaatctgctgctgctgcacttacttgtga |
115 |
Q |
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| T |
25495100 |
tgtgccagataccaacagagacaattgataggctcaggaagaagatatatgaatatcttcttacacatgttgaatctgctgctgctgcacttacttgtga |
25495001 |
T |
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| Q |
116 |
ctcacattcacaatcaacagagattaaaggcaaaaagtgatatatgaatatatgatgaagtacatagcttagcttaaggatgcattattatggtggcttg |
215 |
Q |
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| T |
25495000 |
ctcacagtcacaatcaacagagattaaaggcaaaaggtgatatatgaatatatgatgaagtacatagcttagcttaaggatgcattattatggtggcttg |
25494901 |
T |
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| Q |
216 |
gaggaaatttg |
226 |
Q |
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| T |
25494900 |
gaggaaatttg |
25494890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 42464836 - 42464784
Alignment:
| Q |
54 |
aagaagatatatgaatatcttcttacacatgttgaatctgctgctgctgcact |
106 |
Q |
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| T |
42464836 |
aagaagatatatgaatatcttcttacacatgttgaatctgccgctgctgcact |
42464784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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